View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9695_5 (Length: 513)
Name: NF9695_5
Description: NF9695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9695_5 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 25 - 432
Target Start/End: Original strand, 30405014 - 30405421
Alignment:
| Q |
25 |
atcagttgtgagttccaacaactgatctgttgtcgtctatgagcttccacgataccaactaccaagtgctgcgtatcagctgaaccaattgtgggcctgc |
124 |
Q |
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| T |
30405014 |
atcagttgtgagttccaacaactgatctgttgtcgtctatgagcttccacgataccaactaccaagtgctgcgtatcagctgaaccaattgtgggcctgc |
30405113 |
T |
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| Q |
125 |
ttaatttggcacataatattacaattacaaattattcagattttgtggcaaaagaaataaataattgagtcacacaaaataaaactagctagctatggaa |
224 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30405114 |
ttaatttggcacataataatacaattacaaattattcagattttgtggcaaaagaaataaataattgagtcacacaaaataaaactagctacctatggaa |
30405213 |
T |
|
| Q |
225 |
aaaatactgctgctactcattattcttgtgtgtgtaaactcctaccaattttgctttcatggttgatacattttctaatatatctctttcatgaaattta |
324 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30405214 |
aaaatactactgctactcattattcttttgtgtgtaaactcctaccaattttgctttcatggttgatacattttctaatatatctctttcatggaattta |
30405313 |
T |
|
| Q |
325 |
tagttgaacataacataattccataaaattaatttatgaaataataattgttccacttataaacatgtatattatagttatctttgaatcatcgatgtgt |
424 |
Q |
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||||| ||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| | ||| |
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| T |
30405314 |
tagttcaacataacacagtcccacaaaattaatttatgaaataataattgttccacttataaacatgtacattttggttatctttgaatcatcaacatgt |
30405413 |
T |
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| Q |
425 |
atgtctat |
432 |
Q |
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| T |
30405414 |
atgtctat |
30405421 |
T |
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