View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9695_8 (Length: 423)
Name: NF9695_8
Description: NF9695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9695_8 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 30 - 410
Target Start/End: Original strand, 49871727 - 49872107
Alignment:
| Q |
30 |
gaaagaccattgattatatccaaagcattgttacttagctccaaagaagcgttaagaaccttagccatggtttgtcctgcatgggtagttgtgttctcaa |
129 |
Q |
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| T |
49871727 |
gaaagaccattgattatatccaaagcattgttacttagctccaaagaagcgttaagaaccttagccatggtttgtcctgcatgggtagttgtgttctcaa |
49871826 |
T |
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| Q |
130 |
atccatctaaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaattttgttaagatcaaatttatccaa |
229 |
Q |
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| T |
49871827 |
atccatctaaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaattttgttaagatcaaatttatccaa |
49871926 |
T |
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| Q |
230 |
tgagtgaatagattgatgaacatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagccaattccttg |
329 |
Q |
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| T |
49871927 |
tgagtgaatagattgatgaacatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagccaattccttg |
49872026 |
T |
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| Q |
330 |
tagagtgttgagttgtggatttgtttcgagagttcttcagctgttgcattgaatgcttgtttgatcaattccttcatgtct |
410 |
Q |
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| T |
49872027 |
tagagtgttgagttgtgtatttgtttcacgagttcttcagctgttgcattgaatgcttgtttgatcaattccttcatgtct |
49872107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 30 - 410
Target Start/End: Original strand, 49865796 - 49866176
Alignment:
| Q |
30 |
gaaagaccattgattatatccaaagcattgttacttagctccaaagaagcgttaagaaccttagccatggtttgtcctgcatgggtagttgtgttctcaa |
129 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49865796 |
gaaagtccattgattatatccaaagcattgttagttagctccaaagaagccttaagaaccttagccatggtttgttctgcatgggtagttgtgttctcaa |
49865895 |
T |
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| Q |
130 |
atccatctaaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaattttgttaagatcaaatttatccaa |
229 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
49865896 |
atccatataaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaatttttctaatatcaaatttatccaa |
49865995 |
T |
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| Q |
230 |
tgagtgaatagattgatgaacatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagccaattccttg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49865996 |
tgagtgaatagattgatgaacatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagctaattccttg |
49866095 |
T |
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| Q |
330 |
tagagtgttgagttgtggatttgtttcgagagttcttcagctgttgcattgaatgcttgtttgatcaattccttcatgtct |
410 |
Q |
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| T |
49866096 |
tagagttttgagttatggatttgtttcgagagttcttcagctgttgctttgaatactgctttgatcaattccttcatgtct |
49866176 |
T |
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