View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9695_low_1 (Length: 453)
Name: NF9695_low_1
Description: NF9695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9695_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 199 - 436
Target Start/End: Original strand, 28179481 - 28179728
Alignment:
| Q |
199 |
gaatgaatacattcatgcaattattttcactaccaactaatttgatcttctattagatttatagtattcaaggctcaatcaatgtagaaccgtaagctca |
298 |
Q |
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| T |
28179481 |
gaatgaatacattcatgcaattattttcactaccaactaatttgatcttctattagatttatagtattcaaggctcaatcaatgtagaaccgtaagctcg |
28179580 |
T |
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| Q |
299 |
taaactgctagtaaaattgagnnnnnnnnnattaccagccatcac----------atatatataaatcagcaatcagggaagatatttaaatgttctcag |
388 |
Q |
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| T |
28179581 |
taaactgctagtaaaattgagtttttttttattaccagccatcacatatatatatatatatataaatcagcaatcagggaagatatttaaatgttctcag |
28179680 |
T |
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| Q |
389 |
aataaaagtacgaaatttatcatagaatcctcaatcctcgatcaagct |
436 |
Q |
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| T |
28179681 |
aataaaagtacgaaatttatcatagaatcctcaatcctcgatcaagct |
28179728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 95 - 261
Target Start/End: Original strand, 30126942 - 30127104
Alignment:
| Q |
95 |
aactctggcttggaacttctgttccagccatttgagtgtccgttttcactatgtcatccccatgatgcagtttct--cccacatgtgtcatacactcatg |
192 |
Q |
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| T |
30126942 |
aactctggcttggaacttttgttccagccatttgagtgtccgttttcactatgttatccccgtgaagcagtttctcacccacatgtgtcaaa-------- |
30127033 |
T |
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| Q |
193 |
ctgttagaatgaatacattc--atgcaattattttcactaccaactaatttgatcttctattagatttata |
261 |
Q |
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| T |
30127034 |
ctgttagaatgaatacattcatatgtaattattttcactaccaactaatatgattttcgattagatttata |
30127104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 95 - 261
Target Start/End: Original strand, 30117382 - 30117546
Alignment:
| Q |
95 |
aactctggcttggaacttctgttccagccatttgagtgtccgttttcactatgtcatccccatgatgcagtttct--cccacatgtgtcatacactcatg |
192 |
Q |
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| T |
30117382 |
aactctggcttggaacttttgttccagccatttgagtgtccgttttcactatgttatccccgtgaagcagtttctcacccacatgtgtcaaaca------ |
30117475 |
T |
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| Q |
193 |
ctgttagaatgaatacattc--atgcaattattttcactaccaacta--atttgatcttctattagatttata |
261 |
Q |
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| T |
30117476 |
--attagaatgaatacattcatatgtaattattttcactaccaactaatatatgattttcgattagatttata |
30117546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 42 - 185
Target Start/End: Original strand, 30134475 - 30134617
Alignment:
| Q |
42 |
gattcctaggcaatctttatgaaaatgtttggcttccttgtgcatcagagaacaactctggcttggaacttctgttccagccatttgagtgtccgttttc |
141 |
Q |
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| T |
30134475 |
gattccttcgcaatccttatcaacatgttcggcttccttgtgcatcagagaat---tctggcttggaacttctgttccagacatatgggggtccgttttc |
30134571 |
T |
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| Q |
142 |
actatgtcatccccatgatgcagtt--tctcccacatgtgtcatac |
185 |
Q |
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| T |
30134572 |
actatgtcttccccatgacccggttgctctcccacttgtgtcatac |
30134617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 416
Target Start/End: Original strand, 30135105 - 30135188
Alignment:
| Q |
329 |
attaccagccatcacatatatataaatcagcaatcagggaagatatttaaatgttctcagaataaaagtacgaaatttatcatagaat |
416 |
Q |
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| T |
30135105 |
attaccagccaacacatat--ataaatcagcaatgaggaaaaatatttaaatgttctc--aacaaaaatatgaaatttatcatagaat |
30135188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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