View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9695_low_2 (Length: 409)
Name: NF9695_low_2
Description: NF9695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9695_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 54726285 - 54725904
Alignment:
| Q |
18 |
tatatatcaatcaatatgatgctgtcatagtatatgactatatgccacttttatctctactgacttgtaaccttgctatctgacagcttcactggtggag |
117 |
Q |
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| T |
54726285 |
tatatatcaatcaatatgatgctctcatagtatatgactatatgccacttttatctctactgacttgtaaccttgctatctgacagcttcactggtggag |
54726186 |
T |
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| Q |
118 |
ataccggcattgcaatttcaaagaaggcaggcatgattccgttacaaatggaattgggaggaaaagatgcttgcattgtacttgaagatgctgaccttga |
217 |
Q |
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| T |
54726185 |
ataccggcattgcaatttcaaagaaggcaggcatgattccgttacaaatggaattgggaggaaaagatgcttgcattgtacttgaagatgctgaccttga |
54726086 |
T |
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| Q |
218 |
tttggttgctgcaaacattataaaaggaggtttttcatacaggtgaatgacatgtctcaattagcacttctggtgcaaaggagggagcagggtttgtctt |
317 |
Q |
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| T |
54726085 |
tttggttgctgcaaacattataaaaggaggtttttcatacaggtgaatgacatgtctcaattagcacttctggtgcaaaggagggagcagggtttgtctt |
54725986 |
T |
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| Q |
318 |
ttcatgcatttacttcataaataaatataatcggtgccactataatccatgaacgtatttaaattgcaaacacatccctatg |
399 |
Q |
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| T |
54725985 |
ttcatgcatttacttcataaataaatataaccggtgccactataatccatgaacgtatttaaattgcaaacacatccctatg |
54725904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 261
Target Start/End: Original strand, 3008478 - 3008634
Alignment:
| Q |
105 |
ttcactggtggagataccggcattgcaatttcaaagaaggcaggcatgattccgttacaaatggaattgggaggaaaagatgcttgcattgtacttgaag |
204 |
Q |
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| T |
3008478 |
ttcactggtggagacactggaatagcaatatcaaagaagtctgcaatggttcctcttcaaatggagcttggtggaaaagatgcttgcattgttcttgaag |
3008577 |
T |
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| Q |
205 |
atgctgaccttgatttggttgctgcaaacattataaaaggaggtttttcatacaggt |
261 |
Q |
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| T |
3008578 |
atgctgacttggatttggtagctgctaacattgtgaaaggagggttctcatacaggt |
3008634 |
T |
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