View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9695_low_3 (Length: 243)

Name: NF9695_low_3
Description: NF9695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9695_low_3
NF9695_low_3
[»] chr8 (5 HSPs)
chr8 (15-149)||(11920934-11921069)
chr8 (166-207)||(11920771-11920812)
chr8 (36-130)||(776469-776564)
chr8 (36-130)||(782123-782218)
chr8 (168-214)||(36889226-36889272)
[»] chr2 (3 HSPs)
chr2 (15-113)||(1110617-1110715)
chr2 (167-222)||(1110712-1110767)
chr2 (40-117)||(36776692-36776769)
[»] chr3 (3 HSPs)
chr3 (179-222)||(23624677-23624720)
chr3 (176-212)||(20362182-20362218)
chr3 (40-137)||(53593251-53593349)
[»] chr1 (2 HSPs)
chr1 (176-222)||(34501425-34501471)
chr1 (176-212)||(4198496-4198532)
[»] chr5 (5 HSPs)
chr5 (176-222)||(16948182-16948228)
chr5 (173-212)||(17549402-17549441)
chr5 (36-137)||(7361820-7361922)
chr5 (176-212)||(4428706-4428742)
chr5 (182-222)||(7362051-7362091)
[»] chr4 (1 HSPs)
chr4 (177-222)||(56193896-56193941)
[»] chr7 (1 HSPs)
chr7 (173-212)||(15234692-15234731)


Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 11921069 - 11920934
Alignment:
Q  15 cataggtgtcactgcagtcgaaacttacctataattattatattatccacaaaatatgacatgttatatggtgttgcagcggatacgtgcgctccttaac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  || ||||||||||||||||||||| | ||||||||||||    
T  11921069 cataggtgtcactgcagtcgaaacttacctataattattatattatccacaaaatatcatgtgatatatggtgttgcagcggataggcgcgctccttaac 11920970  T
Q  115 -cccctaggacgtgggttcaatccttgtagccatca 149  Q
     || |||||| |||||||| ||||||||||||||||    
T  11920969 tcctctaggatgtgggttcgatccttgtagccatca 11920934  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 11920812 - 11920771
Alignment:
Q  166 gttaatcttgtaaaactgtttaatatatattctaaaaatatt 207  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  11920812 gttattcttgtaaaactgtttaatatatattctaaaaatatt 11920771  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 776564 - 776469
Alignment:
Q  36 aacttacctataattattatattatccacaaaatatgacatgttatatggtgttgcagcggatacgtgcgctccttaa-ccccctaggacgtgggt 130  Q
    |||||||||| |||||| |||||||||| || |||| | |||||| |||||||||||| ||||| | ||||||| |||  |||||||| |||||||    
T  776564 aacttacctacaattataatattatccataatatatcatatgttacatggtgttgcagtggataggcgcgctccctaatgcccctagggcgtgggt 776469  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 782218 - 782123
Alignment:
Q  36 aacttacctataattattatattatccacaaaatatgacatgttatatggtgttgcagcggatacgtgcgctccttaa-ccccctaggacgtgggt 130  Q
    |||||||||| |||||| |||||||||| || |||| | |||||| |||||||||||| ||||| | ||||||| |||  |||||||| |||||||    
T  782218 aacttacctacaattataatattatccataatatatcatatgttacatggtgttgcagtggataggcgcgctccctaatgcccctagggcgtgggt 782123  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 36889272 - 36889226
Alignment:
Q  168 taatcttgtaaaactgtttaatatatattctaaaaatatttggcaaa 214  Q
    |||||||||||||||||||||||| |||||| ||| |||||||||||    
T  36889272 taatcttgtaaaactgtttaatatgtattctgaaactatttggcaaa 36889226  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 1110617 - 1110715
Alignment:
Q  15 cataggtgtcactgcagtcgaaacttacctataattattatattatccacaaaatatgacatgttatatggtgttgcagcggatacgtgcgctccttaa 113  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||||||    
T  1110617 cataggtgtcactgtagtcaaaacttacctataattattatattatccacaaaatatcacatgatatatggtgttgcagcggataggcgcgctccttaa 1110715  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 1110712 - 1110767
Alignment:
Q  167 ttaatcttgtaaaactgtttaatatatattctaaaaatatttggcaaaatattttg 222  Q
    |||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  1110712 ttaatcttgtaaaactatttaatatatattataaaagtatttggcaaaatattttg 1110767  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 36776692 - 36776769
Alignment:
Q  40 tacctataattattatattatccacaaaatatgacatgttatatggtgttgcagcggatacgtgcgctccttaacccc 117  Q
    ||||||||| ||| |||||||| | |  |||| | |||||| |||||||||||| ||||| |||||||| ||||||||    
T  36776692 tacctataactatcatattatctaaagtatatcatatgttacatggtgttgcagtggataggtgcgctctttaacccc 36776769  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 23624720 - 23624677
Alignment:
Q  179 aactgtttaatatatattctaaaaatatttggcaaaatattttg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  23624720 aactgtttaatatatattctaaaaatatttggcaaaatattttg 23624677  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 20362182 - 20362218
Alignment:
Q  176 taaaactgtttaatatatattctaaaaatatttggca 212  Q
    |||||||||||||||||||||||| ||||||||||||    
T  20362182 taaaactgtttaatatatattctagaaatatttggca 20362218  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 53593251 - 53593349
Alignment:
Q  40 tacctataattattatattatccacaaaatatgacatgttatatggtgttgcagcggatacgtgcgctccttaacccc-ctaggacgtgggttcaatcc 137  Q
    ||||||||||||| |||||||||| || ||||   |||||| ||| |||||||| ||||| | |||||||||  |||| ||||||| ||||||| ||||    
T  53593251 tacctataattatgatattatccataatatattgtatgttacatgttgttgcagtggataggcgcgctccttggccccgctaggacatgggttcgatcc 53593349  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 34501425 - 34501471
Alignment:
Q  176 taaaactgtttaatatatattctaaaaatatttggcaaaatattttg 222  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  34501425 taaaactgtttaatatatattctgaaaatatttggcaaaatattttg 34501471  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 4198496 - 4198532
Alignment:
Q  176 taaaactgtttaatatatattctaaaaatatttggca 212  Q
    |||||||||||||||||||||||  ||||||||||||    
T  4198496 taaaactgtttaatatatattctttaaatatttggca 4198532  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 16948228 - 16948182
Alignment:
Q  176 taaaactgtttaatatatattctaaaaatatttggcaaaatattttg 222  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  16948228 taaaactatttaatatgtattctaaaaatatttggcaaaatattttg 16948182  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 17549402 - 17549441
Alignment:
Q  173 ttgtaaaactgtttaatatatattctaaaaatatttggca 212  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  17549402 ttgtgaaactgtttaatatatattcttaaaatatttggca 17549441  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 137
Target Start/End: Original strand, 7361820 - 7361922
Alignment:
Q  36 aacttacctataattattatattatccacaaaatatgacatgttatatggtgttgcagcggatacgtgcgctccttaaccc-cctaggacgtgggttcaa 134  Q
    ||||||||||||||||| |||||||||| || | || | |||||| ||||||||| || ||||| | | ||||| ||||||  ||||| ||||||||| |    
T  7361820 aacttacctataattataatattatccataatacattatatgttacatggtgttgtagtggataggcgtgctccctaaccctactagggcgtgggttcga 7361919  T
Q  135 tcc 137  Q
    |||    
T  7361920 tcc 7361922  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 4428742 - 4428706
Alignment:
Q  176 taaaactgtttaatatatattctaaaaatatttggca 212  Q
    |||||||||||||||||||||||  ||||||||||||    
T  4428742 taaaactgtttaatatatattcttcaaatatttggca 4428706  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 7362051 - 7362091
Alignment:
Q  182 tgtttaatatatattctaaaaatatttggcaaaatattttg 222  Q
    |||||||||||||||||  ||||| ||||||||||||||||    
T  7362051 tgtttaatatatattctcgaaataattggcaaaatattttg 7362091  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 56193896 - 56193941
Alignment:
Q  177 aaaactgtttaatatatattctaaaaatatttggcaaaatattttg 222  Q
    |||||| ||||||||||||||||||| |||||| ||||||||||||    
T  56193896 aaaactttttaatatatattctaaaattatttgacaaaatattttg 56193941  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 15234731 - 15234692
Alignment:
Q  173 ttgtaaaactgtttaatatatattctaaaaatatttggca 212  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  15234731 ttgtgaaactgtttaatatatattcttaaaatatttggca 15234692  T

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