View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9696_1D_high_5 (Length: 454)
Name: NF9696_1D_high_5
Description: NF9696_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_1D_high_5 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 114 - 454
Target Start/End: Complemental strand, 30276470 - 30276126
Alignment:
| Q |
114 |
atcatataaacatatactacaatgtgtggtattcttgctgtgcttggttgctctgatcctactagagctaagagggttcgtgtccttgagctttcacgca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30276470 |
atcatataaacatatactacaatgtgtggtattcttgctgtgcttggttgctctgatcctactagagctaagagggttcgtgtccttgagctttcacgca |
30276371 |
T |
|
| Q |
214 |
ggcaattattctctttctattcttg-attcttaatttcatgttttacacatgatacttttgtcggatttaatctatgtgcactggtcggtataaagattt |
312 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30276370 |
ggcaattattctctttctattcttgtattcttaatttcatgttttacacatgatacttttgtcggatttaatctatatgcactggtcggtataaagattt |
30276271 |
T |
|
| Q |
313 |
tttacactgttaatcaattgtaaccaaagtttaactttcatcatatctaacttcaaaaccatgcacacgatcttgtgatcaattgagagtgtaa---tat |
409 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
30276270 |
tttacaccgttaatcaattgtaaccaaagtttaactttcatcatatctaacttcaaaaccatgcacacgatcttgtgattaattgagagtgtaatagtat |
30276171 |
T |
|
| Q |
410 |
attgatcgtgcatcaaaatcatatgtttactatctaaatctttta |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30276170 |
attgatcgtgcatcaaaatcatatgtttactatctaaatctttta |
30276126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 25968604 - 25968511
Alignment:
| Q |
132 |
acaatgtgtggtattcttgctgtgcttggttgctctgatcctactagagctaagagggttcgtgtccttgagctttcacgcaggcaattattct |
225 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
25968604 |
acaatgtgtggtatacttgctgtacttggttgctctgatgactcacaagctaagagggttcgcatccttgagctttctcgcaggcaattattct |
25968511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University