View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9696_1D_low_10 (Length: 399)

Name: NF9696_1D_low_10
Description: NF9696_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9696_1D_low_10
NF9696_1D_low_10
[»] chr2 (12 HSPs)
chr2 (17-288)||(11185182-11185462)
chr2 (171-377)||(11192170-11192384)
chr2 (271-351)||(11145085-11145165)
chr2 (268-347)||(11170994-11171073)
chr2 (271-331)||(11117894-11117954)
chr2 (271-336)||(11148380-11148445)
chr2 (273-335)||(11109426-11109488)
chr2 (276-310)||(11198311-11198345)
chr2 (273-321)||(11095314-11095362)
chr2 (273-321)||(11103455-11103503)
chr2 (271-308)||(10794280-10794317)
chr2 (273-326)||(11176981-11177034)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 11185182 - 11185462
Alignment:
Q  17 catcacagcccttacatatatagatataacattttagagtattagaaaattggtaaatatattactcttcatattggtgaga---------gttgactat 107  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||| |||||    
T  11185182 catcacagcccttacatgtatagatataacattttagagtattagaaaattggtaaatatattactcttcatattggtgagatcaagatgagttcactat 11185281  T
Q  108 aaaacatttaattaacttggtgtatatggtgagtttgacaaaatcatgtagtagcattttattttgatactttaaactttcaacaaaatcacagtgtttc 207  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| ||||||    
T  11185282 aaaacatttaattaacttgatgcatatggtgagtttgacaaaatcacgtagtaacattttagtttgatactttaaactttcaacaaaatcacactgtttc 11185381  T
Q  208 gtgattctatcaaactcgttgtggcttcaacaaaatcacatcgcaattatactaaatactataatacatacttgaacaaaa 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11185382 gtgattctatcaaactcgttgtggcttcaacaaaatcacatcgcaattatactaaatactataatacatacttgaacaaaa 11185462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 171 - 377
Target Start/End: Original strand, 11192170 - 11192384
Alignment:
Q  171 ttgatactttaaactttcaacaaaatcaca-gtgtttcgtgattctatcaaactcgttgtggcttcaacaaaatcacatcgcaattatactaaat----- 264  Q
    |||| ||||||||||||||||||||||||| ||  || ||||||||||||||||||||||||||||||||| ||||||||||||||||  || ||         
T  11192170 ttgacactttaaactttcaacaaaatcacatgttctttgtgattctatcaaactcgttgtggcttcaacaatatcacatcgcaattattatatattatat 11192269  T
Q  265 --actataatacatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcatacgaggatctgtttgagaaacgtttgctaagacact 362  Q
      | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||    
T  11192270 ataatataatacatacttgaacaaaacaatcatgaaaatgaagcctaatgaaactggcaaggatacgaggatctgtctgagaaacgtttgctaagatact 11192369  T
Q  363 ttggacaatggaagt 377  Q
    |||||||||||||||    
T  11192370 ttggacaatggaagt 11192384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 351
Target Start/End: Complemental strand, 11145165 - 11145085
Alignment:
Q  271 atacatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcatacgaggatctgtttgagaaacgttt 351  Q
    |||||||||||||||||||| ||||| |||||||||||||  | ||| ||||||||||||| |||||| | ||||||||||    
T  11145165 atacatacttgaacaaaacagtcatggaagtgaagcctaacaagacttgcaagcatacgagtatctgtcttagaaacgttt 11145085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 347
Target Start/End: Complemental strand, 11171073 - 11170994
Alignment:
Q  268 ataatacatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcatacgaggatctgtttgagaaac 347  Q
    ||||||| |||||||||||| |||||||| ||||||||||| || ||||| ||||| |||||||||||||| | ||||||    
T  11171073 ataatacttacttgaacaaagcaatcatggaagtgaagccttatcaaactagcaagtatacgaggatctgtcttagaaac 11170994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 11117954 - 11117894
Alignment:
Q  271 atacatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcatacgag 331  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||| ||| |||| ||||    
T  11117954 atacatacttgaacgaaacaatcatgaaagtgaagcctaatgatactcgcaggcattcgag 11117894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 336
Target Start/End: Complemental strand, 11148445 - 11148380
Alignment:
Q  271 atacatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcatacgaggatct 336  Q
    |||||||||||||||||||| ||||||||||||||||| |  | |||  |||||||||||||||||    
T  11148445 atacatacttgaacaaaacagtcatgaaagtgaagcctgacaagactaccaagcatacgaggatct 11148380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 335
Target Start/End: Complemental strand, 11109488 - 11109426
Alignment:
Q  273 acatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcatacgaggatc 335  Q
    |||||||||||| |||||||||||||| |||||||| |||| ||||||| |||| || |||||    
T  11109488 acatacttgaacgaaacaatcatgaaaatgaagcctgatgatactggcaggcattcggggatc 11109426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 310
Target Start/End: Complemental strand, 11198345 - 11198311
Alignment:
Q  276 tacttgaacaaaacaatcatgaaagtgaagcctaa 310  Q
    |||||||||||||||||||||||||||||||||||    
T  11198345 tacttgaacaaaacaatcatgaaagtgaagcctaa 11198311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 11095362 - 11095314
Alignment:
Q  273 acatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggca 321  Q
    ||||||||||||||| |||||||| || ||||||||||||| |||||||    
T  11095362 acatacttgaacaaagcaatcatggaaatgaagcctaatgagactggca 11095314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 11103503 - 11103455
Alignment:
Q  273 acatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggca 321  Q
    ||||||||||||||| ||||||||||| |||||||| |||| |||||||    
T  11103503 acatacttgaacaaagcaatcatgaaaatgaagcctgatgagactggca 11103455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 10794280 - 10794317
Alignment:
Q  271 atacatacttgaacaaaacaatcatgaaagtgaagcct 308  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  10794280 atacttacttgaacgaaacaatcatgaaagtgaagcct 10794317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 11177034 - 11176981
Alignment:
Q  273 acatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcat 326  Q
    |||||||||||||||||| |||||||| || |||||||||| |||  |||||||    
T  11177034 acatacttgaacaaaacagtcatgaaaatgtagcctaatgagactaccaagcat 11176981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University