View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9696_1D_low_15 (Length: 330)

Name: NF9696_1D_low_15
Description: NF9696_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9696_1D_low_15
NF9696_1D_low_15
[»] chr5 (3 HSPs)
chr5 (1-309)||(6813752-6814065)
chr5 (1-96)||(6806781-6806884)
chr5 (92-199)||(6806496-6806604)
[»] chr4 (3 HSPs)
chr4 (156-230)||(29391148-29391222)
chr4 (159-231)||(8258820-8258891)
chr4 (159-231)||(8272238-8272309)
[»] chr2 (1 HSPs)
chr2 (235-291)||(34881776-34881832)
[»] chr3 (2 HSPs)
chr3 (185-285)||(39736639-39736734)
chr3 (155-224)||(41417131-41417200)
[»] chr7 (1 HSPs)
chr7 (162-231)||(19267374-19267443)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 6814065 - 6813752
Alignment:
Q  1 tatgcatgtacattcatatgtgactcgtgtatccagtgaggagaacataaattc---------aaaagtaatatagttgtggtgaataaaatttgatttc 91  Q
    ||||||||||||| ||||||||||    ||||| ||||||||||||||||||||         |||| ||| ||||||| ||||||||||||||||||||    
T  6814065 tatgcatgtacatgcatatgtgac----gtatctagtgaggagaacataaattcaaaaaattcaaaaataaaatagttggggtgaataaaatttgatttc 6813970  T
Q  92 tatgtataatctaaagaattatctatccgaacaaaaaagaataaaagaaatccgtctaatatatgggcaaggatcatctaaagtggataaaatgtaaatt 191  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6813969 tatgtataatctaaagaattatctatccaaacaaaaaagaataaaagaaatccgtataatatatgggcaaggatcatctaaagtggataaaatgtaaatt 6813870  T
Q  192 aagaaaattaatggctgttattgtaacaaactcataatttcatttgttattctatatctataatatctacctttaatatgttaattaatgattgatattg 291  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  6813869 aagaaaattaatggttgttattgtaacaaactcataatttcatttgttattctatatctataatttctacctttaatatgttaattaatgatggatattg 6813770  T
Q  292 cacatatgtgtacgctat 309  Q
    ||||||||||||||||||    
T  6813769 cacatatgtgtacgctat 6813752  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 6806884 - 6806781
Alignment:
Q  1 tatgcatgtacattcatatgtgactcgtgtatccagtgaggagaacataaattc--------aaaagtaatatagttgtggtgaataaaatttgatttct 92  Q
    ||||||||||||| ||||||||||||||||||  | |||||||||| |||||||        |||| ||||||||||| |||||||||||||||||||||    
T  6806884 tatgcatgtacatgcatatgtgactcgtgtatttaatgaggagaacgtaaattcaaaaatgcaaaaataatatagttggggtgaataaaatttgatttct 6806785  T
Q  93 atgt 96  Q
    ||||    
T  6806784 atgt 6806781  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 6806604 - 6806496
Alignment:
Q  92 tatgtataatctaaagaattatctatccgaacaaaaaagaataaa-agaaatccgtctaatatatgggcaaggatcatctaaagtggataaaatgtaaat 190  Q
    ||||| ||||||||||||| |||||| | |||||||||||||||| | ||    || ||||| ||||||||||||| || |||||  ||||| |||||||    
T  6806604 tatgtctaatctaaagaatcatctatgcaaacaaaaaagaataaataaaagattgtataataaatgggcaaggatcctccaaagtatataaagtgtaaat 6806505  T
Q  191 taagaaaat 199  Q
    ||| |||||    
T  6806504 taaaaaaat 6806496  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 29391148 - 29391222
Alignment:
Q  156 gggcaaggatcatctaaagtggataaaatgtaaattaagaaaattaatggctgttattgtaacaaactcataatt 230  Q
    |||||||| || |||||||||  |||| |||||| |||||||||| | || ||||||||||||||||||||||||    
T  29391148 gggcaagggtcctctaaagtgagtaaagtgtaaagtaagaaaattgagggttgttattgtaacaaactcataatt 29391222  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 8258820 - 8258891
Alignment:
Q  159 caaggatcatctaaagtggataaaatgtaaattaagaaaattaatggctgttattgtaacaaactcataattt 231  Q
    |||||||| |||||||||||||||  ||||| | ||||| | || || |||||||||||||| ||||||||||    
T  8258820 caaggatcctctaaagtggataaagggtaaaatgagaaa-tcaaaggttgttattgtaacaagctcataattt 8258891  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 8272238 - 8272309
Alignment:
Q  159 caaggatcatctaaagtggataaaatgtaaattaagaaaattaatggctgttattgtaacaaactcataattt 231  Q
    |||||||| |||||||||||||||  ||||| | ||||| | || || |||||||||||||| ||||||||||    
T  8272238 caaggatcctctaaagtggataaagggtaaaatgagaaa-tcaaaggttgttattgtaacaagctcataattt 8272309  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 34881776 - 34881832
Alignment:
Q  235 ttgttattctatatctataatatctacctttaatatgttaattaatgattgatattg 291  Q
    |||||||| | |||||||||||| || ||||||| ||||||||||||||||||||||    
T  34881776 ttgttattatgtatctataatatttatctttaatttgttaattaatgattgatattg 34881832  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 285
Target Start/End: Complemental strand, 39736734 - 39736639
Alignment:
Q  185 gtaaattaagaaaattaatggctgttattgtaacaaactcataatttcatttgttattctatatctataatatctacctttaatatgttaattaatgatt 284  Q
    ||||| ||||||||| || || |||||| |||||||||||||  |||     |||||| ||||||||||||||| | ||||||| |||||||||| ||||    
T  39736734 gtaaagtaagaaaatcaaaggttgttatggtaacaaactcatggttt-----gttattatatatctataatatcgatctttaatttgttaattaaagatt 39736640  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 41417131 - 41417200
Alignment:
Q  155 tgggcaaggatcatctaaagtggataaaatgtaaattaagaaaattaatggctgttattgtaacaaactc 224  Q
    |||||||||||| ||||||| |   ||| |||||| ||||||||| || || ||||||||||||||||||    
T  41417131 tgggcaaggatcctctaaagcgagaaaagtgtaaagtaagaaaatcaagggttgttattgtaacaaactc 41417200  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 19267443 - 19267374
Alignment:
Q  162 ggatcatctaaagtggataaaatgtaaattaagaaaattaatggctgttattgtaacaaactcataattt 231  Q
    ||||| |||||||||  |||| |||||||| ||||||| || || ||||||| |||||||||||| ||||    
T  19267443 ggatcctctaaagtgagtaaagtgtaaattgagaaaatcaagggttgttattttaacaaactcatgattt 19267374  T

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