View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9696_1D_low_16 (Length: 309)

Name: NF9696_1D_low_16
Description: NF9696_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9696_1D_low_16
NF9696_1D_low_16
[»] chr6 (5 HSPs)
chr6 (1-286)||(34383364-34383649)
chr6 (192-228)||(34103681-34103717)
chr6 (212-286)||(14309752-14309825)
chr6 (191-228)||(27863694-27863731)
chr6 (192-228)||(11279536-11279572)
[»] chr5 (7 HSPs)
chr5 (212-286)||(8456916-8456990)
chr5 (212-287)||(38397699-38397774)
chr5 (212-286)||(23218586-23218660)
chr5 (192-228)||(22903252-22903288)
chr5 (212-286)||(10081246-10081322)
chr5 (192-260)||(2676500-2676568)
chr5 (192-228)||(25560424-25560460)
[»] chr4 (9 HSPs)
chr4 (212-286)||(17888503-17888577)
chr4 (212-286)||(31377491-31377564)
chr4 (192-228)||(11054448-11054484)
chr4 (212-286)||(16338166-16338240)
chr4 (212-286)||(11054557-11054630)
chr4 (212-245)||(47084113-47084146)
chr4 (191-228)||(50328790-50328827)
chr4 (192-228)||(17888647-17888683)
chr4 (192-228)||(31377385-31377421)
[»] chr1 (7 HSPs)
chr1 (212-286)||(38859952-38860026)
chr1 (230-286)||(23908394-23908450)
chr1 (210-258)||(26511615-26511663)
chr1 (230-286)||(29149511-29149567)
chr1 (212-264)||(37189741-37189792)
chr1 (191-228)||(44107485-44107522)
chr1 (212-252)||(10907635-10907675)
[»] chr3 (5 HSPs)
chr3 (212-286)||(36539733-36539807)
chr3 (212-286)||(8950457-8950531)
chr3 (212-286)||(40845870-40845944)
chr3 (191-225)||(6280458-6280492)
chr3 (191-228)||(48206848-48206885)
[»] chr2 (5 HSPs)
chr2 (212-286)||(3597843-3597917)
chr2 (153-228)||(1387384-1387459)
chr2 (212-286)||(14186391-14186465)
chr2 (212-286)||(1386115-1386189)
chr2 (192-228)||(23685467-23685503)
[»] chr8 (3 HSPs)
chr8 (212-286)||(42072529-42072603)
chr8 (212-253)||(16591361-16591402)
chr8 (192-228)||(16591440-16591476)
[»] scaffold0079 (1 HSPs)
scaffold0079 (212-286)||(54620-54694)
[»] chr7 (4 HSPs)
chr7 (212-286)||(19334513-19334587)
chr7 (212-262)||(41853212-41853262)
chr7 (192-228)||(10334173-10334209)
chr7 (192-228)||(17303212-17303248)
[»] scaffold0016 (1 HSPs)
scaffold0016 (191-228)||(85505-85542)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 34383649 - 34383364
Alignment:
Q  1 gagaagcatactctaaggtttcatgccaacatctccggaccaacgttagtaacttttttcaatggtaaatgttaattgttaatttgttatattagttttt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34383649 gagaagcatactctaaggtttcatgccaacatcttcggaccaacgttagtaacttttttcaatggtaaatgttaattgttaatttgttagattagttttt 34383550  T
Q  101 acaccattaatactagagctaggagtagtgaaaatggctattggttgtattggcggagctaggattattgtaaagttcgggtnnnnnnnntttgcaacac 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||  |        ||||||||||    
T  34383549 acaccattaaaactagagctaggagtagtgaaaatggctattggttgcagtggcggagctaggattattgtaaagttcgattaaaaaaattttgcaacac 34383450  T
Q  201 atttataaaggtttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||    
T  34383449 atttataaaggtttgcataagaaattgcgaaaaatttaggccggagcccgggcgaatacccggggtcgccaggccatagaaccgcc 34383364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 34103681 - 34103717
Alignment:
Q  192 ttgcaacacatttataaaggtttacataagaaattgc 228  Q
    |||||||||||||| ||||||||||||||||||||||    
T  34103681 ttgcaacacatttacaaaggtttacataagaaattgc 34103717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 14309825 - 14309752
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    |||||| |||||||||| |||||||| |||| ||| |||||||| || ||||||||||| |||| || |||||||    
T  14309825 tttacacaagaaattgcaaaaaattt-ggcccgaaaccgggcgagtgtctggggtcgccgggccttataaccgcc 14309752  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 27863694 - 27863731
Alignment:
Q  191 tttgcaacacatttataaaggtttacataagaaattgc 228  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  27863694 tttgcaacacatttatagatgtttacataagaaattgc 27863731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 11279536 - 11279572
Alignment:
Q  192 ttgcaacacatttataaaggtttacataagaaattgc 228  Q
    |||||||||||||||| || |||||||||||||||||    
T  11279536 ttgcaacacatttatagagatttacataagaaattgc 11279572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 8456990 - 8456916
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    ||||||||||||||||  |||||||| ||||||| ||||||||| ||| |||||||||| |||||||||||||||    
T  8456990 tttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcatggggtcgccgggccatagaaccgcc 8456916  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 38397699 - 38397774
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcct 287  Q
    |||||| |||||||||| |||||||| | ||||| ||||||||| |||| ||||||||| |||| |||||||||||    
T  38397699 tttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcct 38397774  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 286
Target Start/End: Original strand, 23218586 - 23218660
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    |||||| |||||||||| |||| ||| | ||||||||||||||| |||| ||| ||||| |||| ||||||||||    
T  23218586 tttacacaagaaattgcaaaaactttggcccggaacccgggcgagtgcccgggatcgccgggccttagaaccgcc 23218660  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 22903252 - 22903288
Alignment:
Q  192 ttgcaacacatttataaaggtttacataagaaattgc 228  Q
    |||||||||||||||| ||||||||||||||||||||    
T  22903252 ttgcaacacatttatagaggtttacataagaaattgc 22903288  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 286
Target Start/End: Original strand, 10081246 - 10081322
Alignment:
Q  212 tttacataagaaattgcgaaaaat--ttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    ||||||||||||||||  |||||   || |||| || ||||||||| |||||||| ||||| |||||||||||||||    
T  10081246 tttacataagaaattgaaaaaaaaaattgggccagagcccgggcgagtgcctgggatcgccgggccatagaaccgcc 10081322  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 2676568 - 2676500
Alignment:
Q  192 ttgcaacacatttataaaggtttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcc 260  Q
    ||||||||||||||||  ||||||||||||||||||  ||||| || | || || ||||||||| ||||    
T  2676568 ttgcaacacatttataggggtttacataagaaattgaaaaaaaattggaccagagcccgggcgagtgcc 2676500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 25560460 - 25560424
Alignment:
Q  192 ttgcaacacatttataaaggtttacataagaaattgc 228  Q
    ||||||||||||||||  |||||||||||||||||||    
T  25560460 ttgcaacacatttatatgggtttacataagaaattgc 25560424  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 17888577 - 17888503
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    ||||||||||||||||  |||||||| ||||||| ||||||||| |||| ||||||||| |||||||||||||||    
T  17888577 tttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcccggggtcgcctggccatagaaccgcc 17888503  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 286
Target Start/End: Original strand, 31377491 - 31377564
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    ||||||||||||||||  |||||||| ||||||| ||||||||| |||| ||||||||| |||||||||||||||    
T  31377491 tttacataagaaattga-aaaaatttgggccggagcccgggcgagtgcccggggtcgccgggccatagaaccgcc 31377564  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 11054448 - 11054484
Alignment:
Q  192 ttgcaacacatttataaaggtttacataagaaattgc 228  Q
    |||||||||||||||||||||||||||||||||||||    
T  11054448 ttgcaacacatttataaaggtttacataagaaattgc 11054484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 16338240 - 16338166
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    |||||| || ||||||| ||||| || | |||||| ||||||||||||| ||||||||| |||| ||||||||||    
T  16338240 tttacacaaaaaattgcaaaaaaattggcccggaatccgggcgaatgcccggggtcgccgggccttagaaccgcc 16338166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 286
Target Start/End: Original strand, 11054557 - 11054630
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    ||||||||||||||||| |||||||  | ||||| |||||| || |||  ||||||||| |||||||||||||||    
T  11054557 tttacataagaaattgcaaaaaattg-gaccggagcccgggtgagtgctcggggtcgccgggccatagaaccgcc 11054630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 47084113 - 47084146
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccgga 245  Q
    ||||||||||||||||| ||||||||||||||||    
T  47084113 tttacataagaaattgcaaaaaatttaggccgga 47084146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 50328790 - 50328827
Alignment:
Q  191 tttgcaacacatttataaaggtttacataagaaattgc 228  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  50328790 tttgcaacacatttataagggtttacataaaaaattgc 50328827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 17888683 - 17888647
Alignment:
Q  192 ttgcaacacatttataaaggtttacataagaaattgc 228  Q
    ||||||||||||||||  |||||||||||||||||||    
T  17888683 ttgcaacacatttataggggtttacataagaaattgc 17888647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 31377385 - 31377421
Alignment:
Q  192 ttgcaacacatttataaaggtttacataagaaattgc 228  Q
    ||||||||||||||||  |||||||||||||||||||    
T  31377385 ttgcaacacatttatagcggtttacataagaaattgc 31377421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 286
Target Start/End: Original strand, 38859952 - 38860026
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    ||||||||||||||||  |||||||| ||||||| ||||||||| |||| ||||||||| |||||||||||||||    
T  38859952 tttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcccggggtcgccgggccatagaaccgcc 38860026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 23908394 - 23908450
Alignment:
Q  230 aaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    |||||||| | ||||| ||||||||| |||||||||||||| |||| ||||||||||    
T  23908394 aaaaatttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcc 23908450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 26511663 - 26511615
Alignment:
Q  210 ggtttacataagaaattgcgaaaaatttaggccggaacccgggcgaatg 258  Q
    ||||||||||||||||||| ||||| |||||||||| ||||||| ||||    
T  26511663 ggtttacataagaaattgcaaaaaaattaggccggagcccgggcaaatg 26511615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 29149567 - 29149511
Alignment:
Q  230 aaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    |||||||| | ||||| ||||||||| ||||||||||||||||||| || |||||||    
T  29149567 aaaaatttggtccggagcccgggcgagtgcctggggtcgccaggccttaaaaccgcc 29149511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 37189741 - 37189792
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggg 264  Q
    ||||||||||||||||| |||||||| |||||||  |||||||||||||||||    
T  37189741 tttacataagaaattgc-aaaaatttgggccggagtccgggcgaatgcctggg 37189792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 44107522 - 44107485
Alignment:
Q  191 tttgcaacacatttataaaggtttacataagaaattgc 228  Q
    |||||||||||||||||| | |||||||||||||||||    
T  44107522 tttgcaacacatttataaggttttacataagaaattgc 44107485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 10907675 - 10907635
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccggg 252  Q
    ||||||||||||||||| |||||||| ||||||| ||||||    
T  10907675 tttacataagaaattgcaaaaaatttgggccggagcccggg 10907635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 286
Target Start/End: Original strand, 36539733 - 36539807
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    |||||||||||||||||  ||||||||||||||| ||||||||| |||| | | |||||||||| ||||||||||    
T  36539733 tttacataagaaattgcataaaatttaggccggagcccgggcgactgcccgagctcgccaggccttagaaccgcc 36539807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 8950531 - 8950457
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    |||||| |||||||||| |||||||| | || || ||||||||| |||| |||||||||||||| ||||||||||    
T  8950531 tttacacaagaaattgcaaaaaatttggcccagagcccgggcgagtgcccggggtcgccaggccttagaaccgcc 8950457  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 40845944 - 40845870
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    |||||| || ||||||| ||||||||   |||||||||||||||||||| | ||||||| |||| ||||||||||    
T  40845944 tttacacaaaaaattgcaaaaaatttgacccggaacccgggcgaatgcccgaggtcgccgggccttagaaccgcc 40845870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 6280492 - 6280458
Alignment:
Q  191 tttgcaacacatttataaaggtttacataagaaat 225  Q
    |||||||||||||||||||||||||||||| ||||    
T  6280492 tttgcaacacatttataaaggtttacataaaaaat 6280458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 48206848 - 48206885
Alignment:
Q  191 tttgcaacacatttataaaggtttacataagaaattgc 228  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  48206848 tttgcaacacatttataagtgtttacataagaaattgc 48206885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 3597917 - 3597843
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    |||||| |||||||||| |||||||| | ||||| ||||||||| |||||||||||||| |||| ||||||||||    
T  3597917 tttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcc 3597843  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 1387459 - 1387384
Alignment:
Q  153 gcggagctaggattattgtaaagttcgggtnnnnnnnntttgcaacacatttataaaggtttacataagaaattgc 228  Q
    ||||||| ||||||||||||||||||||||        |||||||||||||| ||| |||||||||||||||||||    
T  1387459 gcggagccaggattattgtaaagttcgggtaaaaaaaatttgcaacacatttgtaagggtttacataagaaattgc 1387384  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 14186465 - 14186391
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    |||||| |||||||| | |||||||| | ||||| | ||||||| |||||||||||||| |||| ||||||||||    
T  14186465 tttacacaagaaattacaaaaaatttggcccggagctcgggcgagtgcctggggtcgccgggccttagaaccgcc 14186391  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 1386189 - 1386115
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    ||||||||||||||||| ||||| || || | || ||||||||| |||| ||||||| |  ||||||||||||||    
T  1386189 tttacataagaaattgcaaaaaaattgggtccgagcccgggcgagtgcccggggtcgtcgagccatagaaccgcc 1386115  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 23685503 - 23685467
Alignment:
Q  192 ttgcaacacatttataaaggtttacataagaaattgc 228  Q
    |||||||| |||||||| |||||||||||||||||||    
T  23685503 ttgcaacatatttataagggtttacataagaaattgc 23685467  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 286
Target Start/End: Original strand, 42072529 - 42072603
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    |||||| |||||||||| ||||| || | ||||| ||||||||| |||| ||||||||| |||||||||||||||    
T  42072529 tttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggtcgccgggccatagaaccgcc 42072603  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 16591402 - 16591361
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggc 253  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  16591402 tttacataagaaattgcaaaaaatttaggccggaacccgggc 16591361  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 16591476 - 16591440
Alignment:
Q  192 ttgcaacacatttataaaggtttacataagaaattgc 228  Q
    ||||||||||||||||| |||||||||||||||||||    
T  16591476 ttgcaacacatttataagggtttacataagaaattgc 16591440  T

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Target: scaffold0079 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 286
Target Start/End: Original strand, 54620 - 54694
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    |||||| || ||||||| ||||| || | |||||| ||||||||||||| ||||||||| |||| ||||||||||    
T  54620 tttacacaaaaaattgcaaaaaaattggcccggaatccgggcgaatgcccggggtcgccgggccttagaaccgcc 54694  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 19334587 - 19334513
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctggggtcgccaggccatagaaccgcc 286  Q
    ||||||||||||||||| ||||| || ||||| |||| ||| || || | ||||||||| |||||||||||||||    
T  19334587 tttacataagaaattgcaaaaaaattgggccgaaacctgggggagtgaccggggtcgccgggccatagaaccgcc 19334513  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 41853212 - 41853262
Alignment:
Q  212 tttacataagaaattgcgaaaaatttaggccggaacccgggcgaatgcctg 262  Q
    |||| |||||||||||| |||||||| ||||||| ||||||||| ||||||    
T  41853212 tttaaataagaaattgcaaaaaatttgggccggagcccgggcgagtgcctg 41853262  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 10334173 - 10334209
Alignment:
Q  192 ttgcaacacatttataaaggtttacataagaaattgc 228  Q
    ||||||||||||||||  |||||||||||||||||||    
T  10334173 ttgcaacacatttataggggtttacataagaaattgc 10334209  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 17303248 - 17303212
Alignment:
Q  192 ttgcaacacatttataaaggtttacataagaaattgc 228  Q
    ||||||||||||||||  |||||||||||||||||||    
T  17303248 ttgcaacacatttatagtggtttacataagaaattgc 17303212  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 85505 - 85542
Alignment:
Q  191 tttgcaacacatttataaaggtttacataagaaattgc 228  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  85505 tttgcaacatatttatagaggtttacataagaaattgc 85542  T

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