View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9696_1D_low_18 (Length: 304)
Name: NF9696_1D_low_18
Description: NF9696_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_1D_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 91 - 274
Target Start/End: Complemental strand, 43232228 - 43232045
Alignment:
| Q |
91 |
agagaagacaaatcgagttgaagtggattaaaaatcaagtcaacctaaataagtatgtaataagggatcatgaaggcatttacacacacacaatagattt |
190 |
Q |
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| T |
43232228 |
agagaagacaaaacgagttgaagtggattaaaaatcaagtcaacgtaaataagtatgtaataagggatcatgaaggcatttacacacacacaatagattt |
43232129 |
T |
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| Q |
191 |
gaaattttgaattctaaatcatcttccaagagaatcccaatttagctttctgtgtgtaacaaatatcaagtagaggtcttatat |
274 |
Q |
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| T |
43232128 |
gaaattttgaattctgcatcatcttccaagagaatcccaatttagctttctgtgtgtaacaaatatcaagtagaggtctcatat |
43232045 |
T |
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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 52545238 - 52545181
Alignment:
| Q |
42 |
tagaaggcacaacaatcaaatgcatacatcaaagagccataaactaaagagagaagac |
99 |
Q |
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| T |
52545238 |
tagaaggcacaacaatcaaatgcatacatcaaagagccataaactaaagagagaagac |
52545181 |
T |
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