View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9696_1D_low_2 (Length: 702)
Name: NF9696_1D_low_2
Description: NF9696_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_1D_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 203 - 491
Target Start/End: Complemental strand, 9499596 - 9499308
Alignment:
| Q |
203 |
accaaatacggtaaatctaaacacagctgtttcacttagaattatttgcagtctgttgggtctgaacagttccaacaccggattttgctgcttttaaccc |
302 |
Q |
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| T |
9499596 |
accaaatacggtaaatctaaacacagctgtttcacttagaattatttgcagtctgttgggtctgaacagttccaacgctggattttgctgcttttaaccc |
9499497 |
T |
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| Q |
303 |
aatttcttatggggataaaatcaccataaaacaatggttttgtgatggtctaatccaatttctcaggatatgtttactaaaaagtaggggagcatgcggc |
402 |
Q |
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| T |
9499496 |
aatttcttatggggataaaatcaccataaaacaatggttttgtgatggtctaatccaatttctaaagatatgtttactaaaaagtaggggagcatgcggc |
9499397 |
T |
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| Q |
403 |
tgaattataagaaaacatcatccaacttaaaatcatgcaatgtataaatatagcattgggctattttgtgtagtaattctttccataat |
491 |
Q |
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| T |
9499396 |
tgaattataagaaaacatcatccaacttaaaatcatgcaatgtataaatatagcattgggctattttgtgtagtaattctttccataat |
9499308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 9499747 - 9499594
Alignment:
| Q |
16 |
ggacatcataggtgggtcatgcagaagtggggaagtaattccccattttacatgcctgatgaaataacggtcacgcatcactccttggatgtgttgggca |
115 |
Q |
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| T |
9499747 |
ggacaccataggtgggtcatgcagaaatggggaagtaattccccattttacatgcctgatgaaataacggtcacgcaccactccttggatgcattggaca |
9499648 |
T |
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| Q |
116 |
gcggctacatttagctacccaaaatcggtgcaaccaactaccgtggcagagacc |
169 |
Q |
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| T |
9499647 |
gcggctacatttagctacccaaaatcagtgcaaccaactaccgtggcagagacc |
9499594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 645 - 680
Target Start/End: Complemental strand, 9499142 - 9499107
Alignment:
| Q |
645 |
aaggtattatgtaactggaaaacggtgagctgaaag |
680 |
Q |
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| T |
9499142 |
aaggtattatgtaactggaaaacggtgagctgaaag |
9499107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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