View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9696_1D_low_20 (Length: 289)

Name: NF9696_1D_low_20
Description: NF9696_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9696_1D_low_20
NF9696_1D_low_20
[»] chr8 (20 HSPs)
chr8 (1-269)||(3580975-3581243)
chr8 (155-220)||(3581752-3581818)
chr8 (1-111)||(3365768-3365877)
chr8 (1-111)||(13789759-13789868)
chr8 (44-111)||(31177470-31177537)
chr8 (65-111)||(3323112-3323158)
chr8 (1-43)||(3430093-3430135)
chr8 (72-113)||(3326838-3326879)
chr8 (72-107)||(3260068-3260103)
chr8 (72-123)||(3266757-3266808)
chr8 (64-111)||(3376738-3376785)
chr8 (72-111)||(7163984-7164023)
chr8 (72-111)||(13809916-13809955)
chr8 (66-111)||(3397136-3397181)
chr8 (1-106)||(3406023-3406127)
chr8 (86-123)||(3430046-3430083)
chr8 (1-29)||(3284159-3284187)
chr8 (72-108)||(3284229-3284265)
chr8 (72-108)||(3319352-3319388)
chr8 (72-112)||(3389615-3389655)
[»] chr5 (2 HSPs)
chr5 (57-111)||(15804731-15804785)
chr5 (1-111)||(20813469-20813578)
[»] chr3 (2 HSPs)
chr3 (72-111)||(32410117-32410156)
chr3 (66-111)||(6904241-6904286)
[»] chr2 (1 HSPs)
chr2 (67-111)||(14766069-14766113)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 3581243 - 3580975
Alignment:
Q  1 gaataaacaacacataaagttattcccttcctgatacaatcacctattctcgggtccttggagaagtactaaaggtccttcacatgtataggctaaccaa 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3581243 gaataaacaacacataaagttattcccttcatgatacaatcacctattatcgggtccttggagaagtactaaaggtccttcacatgtataggctaaccaa 3581144  T
Q  101 gaaggataattactgctcggaagaatcacgggttgtcaatccctggatcccactcaaattgttgaatattagtatgaagagctagatcccactcaaagac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3581143 gaaggataattactgctcggaagaatcacgggttgtcaatccctagatcccactcaaattgttgaatattagtatgaagagctagatcccactcaaagac 3581044  T
Q  201 tagaaaagtcagccaattttgtactcatatttgaggaggactgtgaagtggcggcatattggtggttta 269  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3581043 tagaaaagtcagcgaattttgtactcatatttgaggaggactgtgaagtggcggcatattggtggttta 3580975  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 3581818 - 3581752
Alignment:
Q  155 caaattgttgaatattagtatgaagagctagatccc-actcaaagactagaaaagtcagccaatttt 220  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  3581818 caaattgttgaatattagtatgaagagctagatcccaactcaaagactagaaaaatcagccaatttt 3581752  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 3365877 - 3365768
Alignment:
Q  1 gaataaacaacacataaagttattcccttcctgatacaatcacctattctcgggtccttggagaagtactaaaggtccttcacatgtataggctaaccaa 100  Q
    ||||||| ||| ||||||| |||||||||| ||  | ||||||  || ||||||  |||||| ||||||| |||||||||||| | ||||||||| ||||    
T  3365877 gaataaagaacgcataaagctattcccttcatgcaagaatcacg-atcctcgggcacttggaaaagtactgaaggtccttcacctttataggctagccaa 3365779  T
Q  101 gaaggataatt 111  Q
    |||||||||||    
T  3365778 gaaggataatt 3365768  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 13789868 - 13789759
Alignment:
Q  1 gaataaacaacacataaagttattcccttcctgatacaatcacctattctcgggtccttggagaagtactaaaggtccttcacatgtataggctaaccaa 100  Q
    ||||||||||||||||||||||||||||||  |   |||||| |||| ||| ||| |||| | |  |||| ||| |||||||| ||||||||||||||||    
T  13789868 gaataaacaacacataaagttattcccttcaagcagcaatca-ctatcctcaggtacttgaaaatttactgaagatccttcacctgtataggctaaccaa 13789770  T
Q  101 gaaggataatt 111  Q
    ||||| |||||    
T  13789769 gaagggtaatt 13789759  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 31177537 - 31177470
Alignment:
Q  44 ctattctcgggtccttggagaagtactaaaggtccttcacatgtataggctaaccaagaaggataatt 111  Q
    |||||||||||  |||||| ||||||  |||||||||| ||| ||||||||||||| |||||||||||    
T  31177537 ctattctcgggcacttggaaaagtaccgaaggtccttcgcatttataggctaaccatgaaggataatt 31177470  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 3323112 - 3323158
Alignment:
Q  65 agtactaaaggtccttcacatgtataggctaaccaagaaggataatt 111  Q
    |||||| ||||||||||||  ||||||||||||||||||||||||||    
T  3323112 agtactgaaggtccttcaccagtataggctaaccaagaaggataatt 3323158  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3430135 - 3430093
Alignment:
Q  1 gaataaacaacacataaagttattcccttcctgatacaatcac 43  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  3430135 gaataaacaacacataaacttattcccttcatgatacaatcac 3430093  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 3326838 - 3326879
Alignment:
Q  72 aaggtccttcacatgtataggctaaccaagaaggataattac 113  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  3326838 aaggtccttcacttgtatagactaaccaagaaggataattac 3326879  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 3260068 - 3260103
Alignment:
Q  72 aaggtccttcacatgtataggctaaccaagaaggat 107  Q
    |||||||||||| |||||||||||||||||||||||    
T  3260068 aaggtccttcacctgtataggctaaccaagaaggat 3260103  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 3266757 - 3266808
Alignment:
Q  72 aaggtccttcacatgtataggctaaccaagaaggataattactgctcggaag 123  Q
    |||||||||||| ||||||| |||| |||||||||||||| | |||||||||    
T  3266757 aaggtccttcacttgtatagactaagcaagaaggataattgccgctcggaag 3266808  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 3376785 - 3376738
Alignment:
Q  64 aagtactaaaggtccttcacatgtataggctaaccaagaaggataatt 111  Q
    ||||||| ||| |||||||| | |||||||||||||||||||||||||    
T  3376785 aagtactgaagttccttcacctttataggctaaccaagaaggataatt 3376738  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 7163984 - 7164023
Alignment:
Q  72 aaggtccttcacatgtataggctaaccaagaaggataatt 111  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  7163984 aaggtccttcaccagtataggctaaccaagaaggataatt 7164023  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 13809955 - 13809916
Alignment:
Q  72 aaggtccttcacatgtataggctaaccaagaaggataatt 111  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  13809955 aaggtccatcacatctataggctaaccaagaaggataatt 13809916  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 3397136 - 3397181
Alignment:
Q  66 gtactaaaggtccttcacatgtataggctaaccaagaaggataatt 111  Q
    ||||| |||||||||| ||| |||||||||||||| ||||||||||    
T  3397136 gtactgaaggtccttcgcatttataggctaaccaataaggataatt 3397181  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 3406023 - 3406127
Alignment:
Q  1 gaataaacaacacataaagttattcccttcctgatacaatcacctattctcgggtccttggagaagtactaaaggtccttcacatgtataggctaaccaa 100  Q
    ||||||| |||||||||||||||||||||| |   ||||| || ||| || |||  |||| | |  |||| | ||||| |||||||||||||||||||||    
T  3406023 gaataaagaacacataaagttattcccttcattccacaattac-tatccttgggcacttgaaaacatactgatggtccctcacatgtataggctaaccaa 3406121  T
Q  101 gaagga 106  Q
    ||||||    
T  3406122 gaagga 3406127  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 3430083 - 3430046
Alignment:
Q  86 gtataggctaaccaagaaggataattactgctcggaag 123  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  3430083 gtataggctaaccaagaaggataattgctgcccggaag 3430046  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 3284159 - 3284187
Alignment:
Q  1 gaataaacaacacataaagttattccctt 29  Q
    |||||||||||||||||||||||||||||    
T  3284159 gaataaacaacacataaagttattccctt 3284187  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 3284229 - 3284265
Alignment:
Q  72 aaggtccttcacatgtataggctaaccaagaaggata 108  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  3284229 aaggtccttcacctgtgtaggctaaccaagaaggata 3284265  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 3319388 - 3319352
Alignment:
Q  72 aaggtccttcacatgtataggctaaccaagaaggata 108  Q
    |||||||||||| | ||||||||||||||||||||||    
T  3319388 aaggtccttcacctctataggctaaccaagaaggata 3319352  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 3389615 - 3389655
Alignment:
Q  72 aaggtccttcacatgtataggctaaccaagaaggataatta 112  Q
    |||||||||||| |  |||||||||||||||||||||||||    
T  3389615 aaggtccttcacctcgataggctaaccaagaaggataatta 3389655  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 15804785 - 15804731
Alignment:
Q  57 cttggagaagtactaaaggtccttcacatgtataggctaaccaagaaggataatt 111  Q
    |||||| ||||||| |||||||||||| | |||||||||||||||||||||||||    
T  15804785 cttggaaaagtactgaaggtccttcacctttataggctaaccaagaaggataatt 15804731  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 20813578 - 20813469
Alignment:
Q  1 gaataaacaacacataaagttattcccttcctgatacaatcacctattctcgggtccttggagaagtactaaaggtccttcacatgtataggctaaccaa 100  Q
    |||||||||||||| |||| |||||||||| ||  | || ||| ||| ||| ||  |||| ||||||||  ||| |||||| ||| ||||||||||||||    
T  20813578 gaataaacaacacacaaagctattcccttcatgcaagaaccac-tatcctcaggcacttgaagaagtacagaagatccttcgcatttataggctaaccaa 20813480  T
Q  101 gaaggataatt 111  Q
    |||||||||||    
T  20813479 gaaggataatt 20813469  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 32410117 - 32410156
Alignment:
Q  72 aaggtccttcacatgtataggctaaccaagaaggataatt 111  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  32410117 aaggtccttcacctgtataggctaaccaagaaggataatt 32410156  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 6904241 - 6904286
Alignment:
Q  66 gtactaaaggtccttcacatgtataggctaaccaagaaggataatt 111  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||    
T  6904241 gtactgaaggtccttcatttgtataggctaaccaagaaggataatt 6904286  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 14766069 - 14766113
Alignment:
Q  67 tactaaaggtccttcacatgtataggctaaccaagaaggataatt 111  Q
    |||| |||||||| ||||||||||||| |||||||||||||||||    
T  14766069 tactgaaggtcctacacatgtataggccaaccaagaaggataatt 14766113  T

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