View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9696_1D_low_21 (Length: 277)
Name: NF9696_1D_low_21
Description: NF9696_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_1D_low_21 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 30459372 - 30459634
Alignment:
| Q |
14 |
gaacaaaatatgcatagaagatctaatgttgagaaattatactaataa-gatttaagatgatacatcgagttctccctaaattgagaacaacacatttat |
112 |
Q |
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| T |
30459372 |
gaacaaaatatgcatagaagatctaatattgagaaattatactaataaagatttaagataataaatcaagttctccctaaattgagaacaaca--tttat |
30459469 |
T |
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| Q |
113 |
tgatttgaaaataagtacttattatattatttgttacttatcccaatgaaagcaaatagggtccccatgctcctgaagtctacatggtcctgatttaaat |
212 |
Q |
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| T |
30459470 |
tgatttgaaaataagtacttattatattatttcttacttatcccaatgaaagcaaatagggtccccatgttcctgaagtctacatggtcctgatttaaat |
30459569 |
T |
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| Q |
213 |
acattccaattgcaataatcacaattatctaaattgcgaacaccctgtatgtatatatcaaaatg |
277 |
Q |
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| T |
30459570 |
acattccaattgcaataatcacaattatctaaattgcgaacaccctgtatgtatatatcaaaatg |
30459634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 139 - 277
Target Start/End: Original strand, 30447933 - 30448073
Alignment:
| Q |
139 |
ttatttgtta--cttatcccaatgaaagcaaatagggtccccatgctcctgaagtctacatggtcctgatttaaatacattccaattgcaataatcacaa |
236 |
Q |
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| T |
30447933 |
ttatttgttagtcttattccaaggaaagcaaatagggtcccctttttccggagttctacatggtcctgattcgaatacattccaattgcaataatcacaa |
30448032 |
T |
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| Q |
237 |
ttatctaaattgcgaacaccctgtatgtatatatcaaaatg |
277 |
Q |
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| T |
30448033 |
ttatctagtttttcaacaccctgtacgtatatatcaaaatg |
30448073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 38028396 - 38028317
Alignment:
| Q |
160 |
gaaagcaaatagggtccccatgctcctgaagtctacatggtcctgatttaaatacattccaattgcaataatcacaatta |
239 |
Q |
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| T |
38028396 |
gaaagcatataggatccccatgttgttgaattctacatggtcctgacttgaatatattccaattgcaatcatcgcaatta |
38028317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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