View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9696_1D_low_24 (Length: 269)

Name: NF9696_1D_low_24
Description: NF9696_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9696_1D_low_24
NF9696_1D_low_24
[»] chr3 (19 HSPs)
chr3 (18-269)||(36957677-36957927)
chr3 (18-61)||(10955866-10955909)
chr3 (18-60)||(456283-456325)
chr3 (18-60)||(458660-458702)
chr3 (18-60)||(10958163-10958205)
chr3 (18-61)||(41849428-41849471)
chr3 (18-60)||(11168477-11168519)
chr3 (18-60)||(51726847-51726889)
chr3 (18-54)||(5192026-5192062)
chr3 (18-61)||(38210746-38210790)
chr3 (18-60)||(747134-747177)
chr3 (18-61)||(5522465-5522508)
chr3 (18-60)||(10621366-10621409)
chr3 (18-61)||(22114142-22114185)
chr3 (18-60)||(50494374-50494417)
chr3 (18-60)||(53893893-53893936)
chr3 (18-63)||(5900046-5900094)
chr3 (18-60)||(10084229-10084271)
chr3 (18-60)||(3859886-3859930)
[»] scaffold0131 (1 HSPs)
scaffold0131 (18-60)||(14231-14273)
[»] scaffold0038 (1 HSPs)
scaffold0038 (18-60)||(41325-41367)
[»] chr7 (17 HSPs)
chr7 (18-60)||(2935674-2935716)
chr7 (18-60)||(22137484-22137527)
chr7 (18-60)||(40550234-40550277)
chr7 (18-60)||(40552511-40552554)
chr7 (18-61)||(48458058-48458101)
chr7 (18-60)||(1502816-1502858)
chr7 (18-54)||(38397044-38397080)
chr7 (18-62)||(40946735-40946779)
chr7 (18-60)||(1606784-1606827)
chr7 (18-60)||(20297767-20297810)
chr7 (18-60)||(25542933-25542976)
chr7 (18-60)||(38394391-38394434)
chr7 (18-60)||(43253358-43253400)
chr7 (18-60)||(7349117-7349161)
chr7 (18-60)||(7351491-7351535)
chr7 (20-60)||(28485972-28486013)
chr7 (18-61)||(9027033-9027077)
[»] chr6 (16 HSPs)
chr6 (18-60)||(28241163-28241205)
chr6 (18-60)||(33309287-33309329)
chr6 (18-60)||(33311556-33311598)
chr6 (18-60)||(2628727-2628769)
chr6 (18-60)||(30034447-30034489)
chr6 (18-60)||(8717195-8717238)
chr6 (18-60)||(11982872-11982915)
chr6 (18-60)||(12195354-12195397)
chr6 (18-60)||(26065961-26066004)
chr6 (18-60)||(26068235-26068278)
chr6 (18-60)||(29754549-29754592)
chr6 (18-61)||(30967631-30967674)
chr6 (18-60)||(1230090-1230132)
chr6 (18-60)||(5273055-5273099)
chr6 (19-60)||(17038524-17038565)
chr6 (18-60)||(19704403-19704447)
[»] chr4 (16 HSPs)
chr4 (18-60)||(2484715-2484757)
chr4 (18-60)||(9176315-9176357)
chr4 (18-61)||(5198853-5198896)
chr4 (18-60)||(5635318-5635360)
chr4 (18-60)||(8631260-8631302)
chr4 (18-60)||(24348650-24348692)
chr4 (18-60)||(31849440-31849482)
chr4 (18-60)||(11006094-11006137)
chr4 (18-60)||(11008408-11008451)
chr4 (18-60)||(11437812-11437855)
chr4 (18-60)||(22782577-22782620)
chr4 (18-60)||(7941772-7941814)
chr4 (18-60)||(9173987-9174029)
chr4 (18-60)||(17662092-17662134)
chr4 (18-60)||(26085818-26085860)
chr4 (18-60)||(22046526-22046570)
[»] chr2 (6 HSPs)
chr2 (18-60)||(19504178-19504220)
chr2 (18-60)||(42453848-42453890)
chr2 (18-60)||(19501843-19501885)
chr2 (18-54)||(23452084-23452120)
chr2 (18-60)||(36560981-36561024)
chr2 (18-60)||(45332020-45332063)
[»] chr1 (20 HSPs)
chr1 (17-61)||(20302836-20302880)
chr1 (18-61)||(13447116-13447159)
chr1 (18-60)||(13358969-13359011)
chr1 (18-60)||(20291852-20291894)
chr1 (18-62)||(24326058-24326103)
chr1 (18-62)||(47180109-47180154)
chr1 (18-60)||(9459277-9459320)
chr1 (18-60)||(9463104-9463147)
chr1 (18-60)||(16226564-16226607)
chr1 (18-60)||(16231959-16232002)
chr1 (18-60)||(23786235-23786278)
chr1 (18-60)||(47177758-47177801)
chr1 (18-65)||(51750434-51750481)
chr1 (18-60)||(2617913-2617955)
chr1 (18-60)||(15294678-15294720)
chr1 (18-63)||(23816280-23816326)
chr1 (18-60)||(28842889-28842931)
chr1 (23-60)||(51752768-51752805)
chr1 (18-61)||(3579430-3579474)
chr1 (18-61)||(47906661-47906705)
[»] scaffold0250 (1 HSPs)
scaffold0250 (18-57)||(3283-3322)
[»] scaffold0140 (2 HSPs)
scaffold0140 (18-60)||(22521-22564)
scaffold0140 (18-60)||(24796-24839)
[»] chr5 (18 HSPs)
chr5 (18-60)||(15354414-15354457)
chr5 (18-60)||(15356690-15356733)
chr5 (18-60)||(23665441-23665484)
chr5 (18-60)||(23741697-23741740)
chr5 (18-60)||(23793103-23793146)
chr5 (18-60)||(4237023-4237065)
chr5 (18-63)||(10587209-10587255)
chr5 (18-60)||(10750095-10750137)
chr5 (18-60)||(10757571-10757613)
chr5 (18-60)||(21684294-21684336)
chr5 (18-60)||(34476894-34476936)
chr5 (18-60)||(38882483-38882525)
chr5 (18-61)||(3372976-3373020)
chr5 (18-62)||(10528935-10528981)
chr5 (18-60)||(31179213-31179256)
chr5 (18-60)||(4410416-4410458)
chr5 (18-60)||(34479259-34479301)
chr5 (19-60)||(15552642-15552685)
[»] scaffold0068 (1 HSPs)
scaffold0068 (18-60)||(29574-29616)
[»] chr8 (7 HSPs)
chr8 (19-61)||(609189-609231)
chr8 (22-60)||(4424474-4424512)
chr8 (18-60)||(15809669-15809711)
chr8 (18-60)||(32339761-32339803)
chr8 (18-60)||(24873039-24873082)
chr8 (18-61)||(28251409-28251454)
chr8 (29-61)||(3005485-3005517)
[»] scaffold0256 (1 HSPs)
scaffold0256 (19-60)||(16615-16656)
[»] scaffold0472 (1 HSPs)
scaffold0472 (18-60)||(6603-6646)
[»] scaffold0025 (1 HSPs)
scaffold0025 (18-60)||(69133-69176)
[»] scaffold1674 (1 HSPs)
scaffold1674 (18-58)||(1294-1335)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 36957677 - 36957927
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaacatatggtattatgggtttgtccaacattttacatgcaaagacccaagccatgttgaga 117  Q
    ||||||||||||||||| | |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36957677 acatcaagttgttattgatatgattttcatcgaattcagaacatatggtattatgggtttgtccaacattttacatgcaaagacccaagccatgttgaaa 36957776  T
Q  118 ggaatcactttctcttgggaattgggatgcaggcttcatgaaaatcatgtgctttcccattcatgtcgatcaattagtggctaaggaaacttcgaggttt 217  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36957777 ggaatcactttctcttgggaattgggatgcag-cttcatgaaaatcatgtgctttccctttcatgtcgatcaattagtggctaaggaaacttcgaggttt 36957875  T
Q  218 cattggtatgctaacctcttggaacctatttgaagttacctgactaaggaac 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36957876 cattggtatgctaacctcttggaacctatttgaagttacctgactaaggaac 36957927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 10955909 - 10955866
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaacat 61  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  10955909 acatcaagttgttattggtgtgattttcatcgaattcacaacat 10955866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 456283 - 456325
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  456283 acatcaagttgttattggtgtgattttcatcgaattcacaaca 456325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 458660 - 458702
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  458660 acatcaagttgttattggtgtgattttcatcgaattcacaaca 458702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 10958205 - 10958163
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  10958205 acatcaagttgttattggtgtgattttcatcgaattcacaaca 10958163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 41849428 - 41849471
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaacat 61  Q
    |||||||||||||||||||||||||||| |||||||| ||||||    
T  41849428 acatcaagttgttattggtgtgattttcatcgaattcgcaacat 41849471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 11168477 - 11168519
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  11168477 acatcaagttgttattggtgtgattttcatcgaattcgcaaca 11168519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 51726889 - 51726847
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  51726889 acatcaagttgttattggtgtgattttcatcgaattcgcaaca 51726847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 5192026 - 5192062
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattc 54  Q
    |||||||||||||||||||||||||||| ||||||||    
T  5192026 acatcaagttgttattggtgtgattttcatcgaattc 5192062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 38210746 - 38210790
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaacat 61  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  38210746 acatcaagttgttattggtgtgatttttcatcgaattcacaacat 38210790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 747134 - 747177
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  747134 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 747177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 5522508 - 5522465
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaacat 61  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||    
T  5522508 acatcaagttgttattggtgtgattttcaacgaattcgcaacat 5522465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 10621409 - 10621366
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  10621409 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 10621366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 22114185 - 22114142
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaacat 61  Q
    ||||||||||| |||||||||||||||| |||||||| ||||||    
T  22114185 acatcaagttgctattggtgtgattttcatcgaattcgcaacat 22114142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 50494374 - 50494417
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  50494374 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 50494417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 53893936 - 53893893
Alignment:
Q  18 acatcaagttgttattggtgtgattttcg-tcgaattcacaaca 60  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||    
T  53893936 acatcaagttgttattggtgtgattttcgatcgaatttacaaca 53893893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 5900046 - 5900094
Alignment:
Q  18 acatcaagttgttattggtgtgattt---tcgtcgaattcacaacatat 63  Q
    ||||||||||||||||||||||||||   ||||||||||| ||||||||    
T  5900046 acatcaagttgttattggtgtgatttttctcgtcgaattcgcaacatat 5900094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 10084271 - 10084229
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| ||| |||| |||||    
T  10084271 acatcaagttgttattggtgtgattttcatcggattcgcaaca 10084229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 3859886 - 3859930
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcg-tcgaattcacaaca 60  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||    
T  3859886 acatcaagttgttattggtgtgacttttcgatcgaattcacaaca 3859930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 14273 - 14231
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  14273 acatcaagttgttattggtgtgattttcatcgaattcacaaca 14231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 41367 - 41325
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  41367 acatcaagttgttattggtgtgattttcatcgaattcacaaca 41325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 2935674 - 2935716
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  2935674 acatcaagttgttattggtgtgattttcatcgaattcacaaca 2935716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 22137484 - 22137527
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  22137484 acatcaagttgttattggtgtgatttttcgtcgaattcacaaca 22137527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 40550234 - 40550277
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  40550234 acatcaagttgttattggtgtgatttttcgtcgaattcacaaca 40550277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 40552511 - 40552554
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  40552511 acatcaagttgttattggtgtgatttttcgtcgaattcacaaca 40552554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 48458058 - 48458101
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaacat 61  Q
    |||||||||||||||||||||||||||| |||||||| ||||||    
T  48458058 acatcaagttgttattggtgtgattttcatcgaattcgcaacat 48458101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 1502858 - 1502816
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| | ||||||||||||    
T  1502858 acatcaagttgttattggtgtgattttcattgaattcacaaca 1502816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 38397044 - 38397080
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattc 54  Q
    |||||||||||||||||||||||||||| ||||||||    
T  38397044 acatcaagttgttattggtgtgattttcatcgaattc 38397080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 40946735 - 40946779
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaacata 62  Q
    ||||||||||||||||| ||||||| || ||||||||||||||||    
T  40946735 acatcaagttgttattgatgtgattctcatcgaattcacaacata 40946779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 1606784 - 1606827
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  1606784 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 1606827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 20297767 - 20297810
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  20297767 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 20297810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 25542933 - 25542976
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  25542933 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 25542976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 38394391 - 38394434
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  38394391 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 38394434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 43253400 - 43253358
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    ||||||| |||||||||||||||||||| |||||||| |||||    
T  43253400 acatcaaattgttattggtgtgattttcatcgaattcgcaaca 43253358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 7349161 - 7349117
Alignment:
Q  18 acatcaagttgttattggtgtga--ttttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||    
T  7349161 acatcaagttgttattggtgtgattttttcatcgaattcacaaca 7349117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 7351535 - 7351491
Alignment:
Q  18 acatcaagttgttattggtgtga--ttttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||    
T  7351535 acatcaagttgttattggtgtgattttttcatcgaattcacaaca 7351491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 28485972 - 28486013
Alignment:
Q  20 atcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  28485972 atcaagttgttattggtgtgatttttcatcgaattcacaaca 28486013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 9027077 - 9027033
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaacat 61  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||    
T  9027077 acatcaagttgttattggtgtgatttttcatcgaattcgcaacat 9027033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 28241205 - 28241163
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  28241205 acatcaagttgttattggtgtgattttcatcgaattcacaaca 28241163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 33309287 - 33309329
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  33309287 acatcaagttgttattggtgtgattttcatcgaattcacaaca 33309329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 33311556 - 33311598
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  33311556 acatcaagttgttattggtgtgattttcatcgaattcacaaca 33311598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 2628769 - 2628727
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  2628769 acatcaagttgttattggtgtgattttcatcgaattcgcaaca 2628727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 30034489 - 30034447
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  30034489 acatcaagttgttattggtgtgattttcatcgaattcgcaaca 30034447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 8717238 - 8717195
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  8717238 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 8717195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 11982915 - 11982872
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  11982915 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 11982872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 12195397 - 12195354
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  12195397 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 12195354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 26066004 - 26065961
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  26066004 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 26065961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 26068278 - 26068235
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  26068278 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 26068235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 29754592 - 29754549
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  29754592 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 29754549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 30967631 - 30967674
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaacat 61  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||    
T  30967631 acatcaagttgttattggtgtgattttcaacgaattcgcaacat 30967674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 1230132 - 1230090
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||  |||||||| |||||    
T  1230132 acatcaagttgttattggtgtgatttttatcgaattcgcaaca 1230090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 5273099 - 5273055
Alignment:
Q  18 acatcaagttgttattggtgtga--ttttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||    
T  5273099 acatcaagttgttattggtgtgattttttcatcgaattcacaaca 5273055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 17038524 - 17038565
Alignment:
Q  19 catcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    ||||||||| ||||||||||||||||| || |||||||||||    
T  17038524 catcaagtttttattggtgtgattttcatcaaattcacaaca 17038565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 19704447 - 19704403
Alignment:
Q  18 acatcaagttgttattggtgtgattt-tcg-tcgaattcacaaca 60  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  19704447 acatcaagttgttattggtgtgatttctcgatcgaattcacaaca 19704403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 2484757 - 2484715
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  2484757 acatcaagttgttattggtgtgattttcatcgaattcacaaca 2484715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 9176357 - 9176315
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  9176357 acatcaagttgttattggtgtgattttcgtcgaattcgcaaca 9176315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 5198853 - 5198896
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaacat 61  Q
    |||||||||| ||||||||||||||||| |||||||||||||||    
T  5198853 acatcaagttattattggtgtgattttcatcgaattcacaacat 5198896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 5635360 - 5635318
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  5635360 acatcaagttgttattggtgtgattttcatcgaattcgcaaca 5635318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 8631302 - 8631260
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  8631302 acatcaagttgttattggtgtgattttcatcgaattcgcaaca 8631260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 24348650 - 24348692
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  24348650 acatcaagttgttattggtgtgattttcatcgaattcgcaaca 24348692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 31849482 - 31849440
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  31849482 acatcaagttgttattggtgtgattttcatcgaattcgcaaca 31849440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 11006137 - 11006094
Alignment:
Q  18 acatcaagttgttattggtgtgattttcg-tcgaattcacaaca 60  Q
    |||||||||||||||||||||| |||||| ||||||||||||||    
T  11006137 acatcaagttgttattggtgtgtttttcgatcgaattcacaaca 11006094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 11008451 - 11008408
Alignment:
Q  18 acatcaagttgttattggtgtgattttcg-tcgaattcacaaca 60  Q
    |||||||||||||||||||||| |||||| ||||||||||||||    
T  11008451 acatcaagttgttattggtgtgtttttcgatcgaattcacaaca 11008408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 11437812 - 11437855
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  11437812 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 11437855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 22782620 - 22782577
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| |||||||||||||| |||||    
T  22782620 acatcaagttgttattggtgtgatttttcgtcgaattcgcaaca 22782577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 7941772 - 7941814
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    ||||||||||||| |||||||||||||| |||||||| |||||    
T  7941772 acatcaagttgttgttggtgtgattttcatcgaattcgcaaca 7941814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 9174029 - 9173987
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||| ||||||||||| |||||||| |||||    
T  9174029 acatcaagttgttattagtgtgattttcatcgaattcgcaaca 9173987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 17662134 - 17662092
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||||||||  ||||||| |||||    
T  17662134 acatcaagttgttattggtgtgattttcaacgaattcgcaaca 17662092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 26085860 - 26085818
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||||| || |||||||| |||||    
T  26085860 acatcaagttgttattggtgtgattctcatcgaattcgcaaca 26085818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 22046570 - 22046526
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcg-tcgaattcacaaca 60  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||    
T  22046570 acatcaagttgttattggtgtgatttttcgatcgaattcacaaca 22046526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 19504220 - 19504178
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  19504220 acatcaagttgttattggtgtgattttcatcgaattcacaaca 19504178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 42453848 - 42453890
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  42453848 acatcaagttgttattggtgtgattttcatcgaattcacaaca 42453890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 19501885 - 19501843
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  19501885 acatcaagttgttattggtgtgattttcatcgaattcgcaaca 19501843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 23452120 - 23452084
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattc 54  Q
    |||||||||||||||||||||||||||| ||||||||    
T  23452120 acatcaagttgttattggtgtgattttcatcgaattc 23452084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 36561024 - 36560981
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  36561024 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 36560981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 45332063 - 45332020
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  45332063 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 45332020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 20302836 - 20302880
Alignment:
Q  17 gacatcaagttgttattggtgtgattttcgtcgaattcacaacat 61  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||    
T  20302836 gacatcaagttgttattggtgtgattttcatcgaattcgcaacat 20302880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 13447159 - 13447116
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaacat 61  Q
    |||||||||||||||||||||||||||| |||||||| ||||||    
T  13447159 acatcaagttgttattggtgtgattttcatcgaattcgcaacat 13447116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 13358969 - 13359011
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  13358969 acatcaagttgttattggtgtgattttcatcgaattcgcaaca 13359011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 20291852 - 20291894
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  20291852 acatcaagttgttattggtgtgattttcatcgaattcgcaaca 20291894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 24326058 - 24326103
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaacata 62  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  24326058 acatcaagttgttattggtgtgatttttcatcgaattcacaacata 24326103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 47180109 - 47180154
Alignment:
Q  18 acatcaagttgttattggtgtgattttcg-tcgaattcacaacata 62  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||    
T  47180109 acatcaagttgttattggtgtgatttttgatcgaattcacaacata 47180154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 9459320 - 9459277
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  9459320 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 9459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 9463147 - 9463104
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  9463147 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 9463104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 16226564 - 16226607
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  16226564 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 16226607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 16231959 - 16232002
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  16231959 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 16232002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 23786235 - 23786278
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  23786235 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 23786278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 47177758 - 47177801
Alignment:
Q  18 acatcaagttgttattggtgtgattttcg-tcgaattcacaaca 60  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  47177758 acatcaagttgttattggtgtgatttttgatcgaattcacaaca 47177801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 51750434 - 51750481
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaacatatgg 65  Q
    |||||||||||||||||||||||||||  |||||||| ||||| ||||    
T  51750434 acatcaagttgttattggtgtgatttttatcgaattcgcaacaaatgg 51750481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 2617913 - 2617955
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||| ||||| |||||||| |||||    
T  2617913 acatcaagttgttattggtgtggttttcatcgaattcgcaaca 2617955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 15294720 - 15294678
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| ||||| || |||||    
T  15294720 acatcaagttgttattggtgtgattttcatcgaaatcgcaaca 15294678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 23816280 - 23816326
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaacatat 63  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  23816280 acatcaagttgttattggtgtgatttttcatcgaattcgcaacatat 23816326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 28842889 - 28842931
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||| ||||||||||| |||||||| |||||    
T  28842889 acatcaagttgttattagtgtgattttcatcgaattcgcaaca 28842931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 51752768 - 51752805
Alignment:
Q  23 aagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  51752768 aagttattattggtgtgattttcatcgaattcacaaca 51752805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 3579474 - 3579430
Alignment:
Q  18 acatcaagtt-gttattggtgtgattttcgtcgaattcacaacat 61  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||    
T  3579474 acatcaagtttgttattggtgtgtttttcatcgaattcacaacat 3579430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 47906661 - 47906705
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaacat 61  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||    
T  47906661 acatcaagttgttattggtgtgatttttcatcgaattcgcaacat 47906705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 3283 - 3322
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcaca 57  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  3283 acatcaagttgttattggtgtgattttcatcgaattcaca 3322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 22521 - 22564
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  22521 acatcaagttgttattggtgtgatttttcgtcgaattcacaaca 22564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 24796 - 24839
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  24796 acatcaagttgttattggtgtgatttttcgtcgaattcacaaca 24839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 15354457 - 15354414
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  15354457 acatcaagttgttattggtgtgatttttcgtcgaattcacaaca 15354414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 15356733 - 15356690
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  15356733 acatcaagttgttattggtgtgatttttcgtcgaattcacaaca 15356690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 23665441 - 23665484
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  23665441 acatcaagttgttattggtgtgatttttcgtcgaattcacaaca 23665484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 23741740 - 23741697
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  23741740 acatcaagttgttattggtgtgatttttcgtcgaattcacaaca 23741697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 23793146 - 23793103
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  23793146 acatcaagttgttattggtgtgatttttcgtcgaattcacaaca 23793103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 4237023 - 4237065
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||||||||  |||||||||||||    
T  4237023 acatcaagttgttattggtgtgattttcaacgaattcacaaca 4237065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 10587209 - 10587255
Alignment:
Q  18 acatcaagtt-gttattggtgtgattttcgtcgaattcacaacatat 63  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||    
T  10587209 acatcaagtttgttattggtgtgattttcatcgaattcacaacatat 10587255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 10750095 - 10750137
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||  ||||||||||||||    
T  10750095 acatcaagttgttattggtgtgattttgatcgaattcacaaca 10750137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 10757571 - 10757613
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||  ||||||||||||||    
T  10757571 acatcaagttgttattggtgtgattttgatcgaattcacaaca 10757613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 21684336 - 21684294
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  21684336 acatcaagttgttattggtgtgattttcatcgaattcgcaaca 21684294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 34476936 - 34476894
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  34476936 acatcaagttgttattggtgtgattttcatcgaattcgcaaca 34476894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 38882483 - 38882525
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  38882483 acatcaagttgttattggtgtgattttcatcgaattcgcaaca 38882525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 3373020 - 3372976
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaacat 61  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  3373020 acatcaagttgttattggtgtgatttttcatcgaattcacaacat 3372976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 10528981 - 10528935
Alignment:
Q  18 acatcaagttgttattggtgtgattt--tcgtcgaattcacaacata 62  Q
    ||||||||||||||||||||||||||  || ||||||||||||||||    
T  10528981 acatcaagttgttattggtgtgattttctcatcgaattcacaacata 10528935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 31179256 - 31179213
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  31179256 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 31179213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 4410416 - 4410458
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||||||||  ||||||| |||||    
T  4410416 acatcaagttgttattggtgtgattttcaacgaattcgcaaca 4410458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 34479301 - 34479259
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| || ||||| |||||    
T  34479301 acatcaagttgttattggtgtgattttcatcaaattcgcaaca 34479259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 15552642 - 15552685
Alignment:
Q  19 catcaagttgttattggtgtga--ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||    
T  15552642 catcaagttgttattggtgtgattttttcatcgaattcacaaca 15552685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 29574 - 29616
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  29574 acatcaagttgttattggtgtgattttcatcgaattcgcaaca 29616  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 609189 - 609231
Alignment:
Q  19 catcaagttgttattggtgtgattttcgtcgaattcacaacat 61  Q
    ||||||||||||||||||| ||||||| |||||||||||||||    
T  609189 catcaagttgttattggtgcgattttcatcgaattcacaacat 609231  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 4424474 - 4424512
Alignment:
Q  22 caagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  4424474 caagttgttattggtgtgattttcatcgaattcacaaca 4424512  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 15809669 - 15809711
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  15809669 acatcaagttgttattggtgtgattttcatcgaattcgcaaca 15809711  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 32339761 - 32339803
Alignment:
Q  18 acatcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  32339761 acatcaagttgttattggtgtgattttcatcgaattcgcaaca 32339803  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 24873082 - 24873039
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  24873082 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 24873039  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 28251454 - 28251409
Alignment:
Q  18 acatcaagttgttattggtgtga--ttttcgtcgaattcacaacat 61  Q
    |||||||||||||||||||||||  ||||| |||||||||||||||    
T  28251454 acatcaagttgttattggtgtgattttttcatcgaattcacaacat 28251409  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 3005517 - 3005485
Alignment:
Q  29 ttattggtgtgattttcgtcgaattcacaacat 61  Q
    ||||||||||||||||| |||||||||||||||    
T  3005517 ttattggtgtgattttcatcgaattcacaacat 3005485  T

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Target: scaffold0256 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 16615 - 16656
Alignment:
Q  19 catcaagttgttattggtgtgattttcgtcgaattcacaaca 60  Q
    ||||||||| ||||||||||||||||| ||||||||||||||    
T  16615 catcaagtttttattggtgtgattttcatcgaattcacaaca 16656  T

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Target: scaffold0472 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 6603 - 6646
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaaca 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  6603 acatcaagttgttattggtgtgatttttcatcgaattcacaaca 6646  T

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Target: scaffold0025 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 69176 - 69133
Alignment:
Q  18 acatcaagtt-gttattggtgtgattttcgtcgaattcacaaca 60  Q
    |||||||||| |||||||||||||||||| ||||||||||||||    
T  69176 acatcaagtttgttattggtgtgattttcatcgaattcacaaca 69133  T

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Target: scaffold1674 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 1335 - 1294
Alignment:
Q  18 acatcaagttgttattggtgtga-ttttcgtcgaattcacaa 58  Q
    ||||||||||||||||||||||| ||||| ||||||||||||    
T  1335 acatcaagttgttattggtgtgatttttcatcgaattcacaa 1294  T

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