View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9696_1D_low_28 (Length: 236)

Name: NF9696_1D_low_28
Description: NF9696_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9696_1D_low_28
NF9696_1D_low_28
[»] chr8 (8 HSPs)
chr8 (72-157)||(19440631-19440716)
chr8 (72-157)||(19576781-19576866)
chr8 (158-217)||(25188844-25188903)
chr8 (88-158)||(30613694-30613763)
chr8 (168-217)||(24539903-24539952)
chr8 (100-149)||(25239416-25239465)
chr8 (153-217)||(21539467-21539531)
chr8 (72-134)||(23807706-23807768)
[»] chr4 (13 HSPs)
chr4 (82-157)||(10669035-10669110)
chr4 (82-157)||(10882674-10882749)
chr4 (71-157)||(10701925-10702011)
chr4 (71-157)||(10915695-10915781)
chr4 (72-157)||(11169773-11169858)
chr4 (72-149)||(14817268-14817345)
chr4 (105-148)||(22674878-22674921)
chr4 (153-202)||(28086534-28086583)
chr4 (153-217)||(10702051-10702115)
chr4 (153-217)||(10915821-10915885)
chr4 (72-148)||(14826664-14826740)
chr4 (153-215)||(10668933-10668995)
chr4 (153-215)||(10882572-10882634)
[»] chr2 (7 HSPs)
chr2 (71-157)||(6607-6693)
chr2 (71-157)||(21338505-21338591)
chr2 (72-148)||(21888876-21888952)
chr2 (153-217)||(16878558-16878622)
chr2 (153-217)||(16990691-16990755)
chr2 (153-217)||(22827499-22827563)
chr2 (162-217)||(29791097-29791152)
[»] chr6 (6 HSPs)
chr6 (72-158)||(16262185-16262271)
chr6 (79-158)||(9345527-9345606)
chr6 (153-217)||(9345424-9345488)
chr6 (153-202)||(26228320-26228369)
chr6 (153-217)||(16262083-16262146)
chr6 (105-150)||(9340354-9340399)
[»] chr1 (6 HSPs)
chr1 (78-157)||(10215751-10215830)
chr1 (158-217)||(23308295-23308354)
chr1 (35-137)||(19273367-19273469)
chr1 (153-217)||(24057954-24058018)
chr1 (153-217)||(24090413-24090477)
chr1 (153-202)||(43516685-43516734)
[»] scaffold0005 (2 HSPs)
scaffold0005 (72-149)||(22366-22443)
scaffold0005 (72-148)||(12969-13045)
[»] scaffold0042 (1 HSPs)
scaffold0042 (153-217)||(10109-10173)
[»] chr5 (5 HSPs)
chr5 (101-158)||(21231195-21231252)
chr5 (100-148)||(21217914-21217962)
chr5 (103-150)||(22752730-22752777)
chr5 (158-202)||(29253304-29253348)
chr5 (158-218)||(37984662-37984722)
[»] chr3 (4 HSPs)
chr3 (72-158)||(22801094-22801182)
chr3 (158-202)||(21950542-21950586)
chr3 (153-198)||(3575742-3575787)
chr3 (153-202)||(22805791-22805840)
[»] chr7 (4 HSPs)
chr7 (158-217)||(11245545-11245604)
chr7 (75-157)||(15561739-15561823)
chr7 (153-217)||(39888593-39888657)
chr7 (168-217)||(3083385-3083434)
[»] scaffold0290 (1 HSPs)
scaffold0290 (158-217)||(5510-5569)
[»] scaffold0047 (1 HSPs)
scaffold0047 (72-148)||(23474-23550)


Alignment Details
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 19440631 - 19440716
Alignment:
Q  72 atgtatgatcaagactataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcacgccagggg 157  Q
    |||||||| ||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19440631 atgtatgaacaagactttaagtaagatgtaggtgtcctgtctcttgctatccacgccagggggatacaagaggttcacgccagggg 19440716  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 19576781 - 19576866
Alignment:
Q  72 atgtatgatcaagactataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcacgccagggg 157  Q
    |||||||| ||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19576781 atgtatgaacaagactttaagtaagatgtaggtgtcctgtctcttgctatccacgccagggggatacaagaggttcacgccagggg 19576866  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 25188844 - 25188903
Alignment:
Q  158 gtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    ||||||||| ||||||||||| ||||||| |||||||||||||||||||||  |||||||    
T  25188844 gtccgatgtaccttagctaggatttcatcggtaaagtaagggattgtactcgaggttact 25188903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 30613763 - 30613694
Alignment:
Q  88 ataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcacgccaggggg 158  Q
    ||||| ||||| |||||||||||||||||| |||||||  || |||||| |||||||||||||||||||||    
T  30613763 ataagcaagatgtaggtgtcgtgtctcttgttatccacatca-ggggatgcaagaggttcacgccaggggg 30613694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 24539952 - 24539903
Alignment:
Q  168 ccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    ||||||||||||||||||| || |||||||||||||||||| ||||||||    
T  24539952 ccttagctaggttttcatctgtcaagtaagggattgtactcggggttact 24539903  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 25239465 - 25239416
Alignment:
Q  100 taggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcac 149  Q
    |||||||||||||||||||||||||||||| |||||||||  ||||||||    
T  25239465 taggtgtcgtgtctcttgctatccacgccaaggggatacataaggttcac 25239416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 21539467 - 21539531
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    |||| ||||||||| ||||||||||||||||||| || | ||| |||||||||||| ||||||||    
T  21539467 agggagtccgatgtgccttagctaggttttcatcggtcatgtatgggattgtactcggggttact 21539531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 23807706 - 23807768
Alignment:
Q  72 atgtatgatcaagactataagaaagatataggtgtcgtgtctcttgctatccacgccaggggg 134  Q
    |||||||| | |||||||||  || || ||||||||||||||||||| |||||||||| ||||    
T  23807706 atgtatgaaccagactataaataacatgtaggtgtcgtgtctcttgcgatccacgccaagggg 23807768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 10669110 - 10669035
Alignment:
Q  82 aagactataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcacgccagggg 157  Q
    |||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10669110 aagactttaagcaagatgtaggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcacgccagggg 10669035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 10882749 - 10882674
Alignment:
Q  82 aagactataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcacgccagggg 157  Q
    |||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10882749 aagactttaagcaagatgtaggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcacgccagggg 10882674  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 10701925 - 10702011
Alignment:
Q  71 tatgtatgatcaagactataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcacgccagggg 157  Q
    |||||||| | |||||| |||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10701925 tatgtatgtttaagactttaagcaagatgtaggtgtcgtgtctctttctatccacgccagggggatacaagaggttcacgccagggg 10702011  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 10915695 - 10915781
Alignment:
Q  71 tatgtatgatcaagactataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcacgccagggg 157  Q
    |||||||| | |||||| |||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10915695 tatgtatgtttaagactttaagcaagatgtaggtgtcgtgtctctttctatccacgccagggggatacaagaggttcacgccagggg 10915781  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 11169858 - 11169773
Alignment:
Q  72 atgtatgatcaagactataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcacgccagggg 157  Q
    |||||||| ||||||| |||| ||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||    
T  11169858 atgtatgaacaagactttaagcaagatgtaggtgtcgtgtctcttgctatccatgtcagggggatacaagaggttcacaccagggg 11169773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 14817268 - 14817345
Alignment:
Q  72 atgtatgatcaagactataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcac 149  Q
    |||||||| |||||||||||| || || || || || |||||||| ||||||||||||||||||||||||||||||||    
T  14817268 atgtatgaacaagactataagtaacatgtaagtttcatgtctctttctatccacgccagggggatacaagaggttcac 14817345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 22674921 - 22674878
Alignment:
Q  105 gtcgtgtctcttgctatccacgccagggggatacaagaggttca 148  Q
    ||||||||||||| |||||||| |||||||||||||||||||||    
T  22674921 gtcgtgtctcttgttatccacgtcagggggatacaagaggttca 22674878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 28086583 - 28086534
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagggatt 202  Q
    |||| ||||||||| ||||||||||||||||||| || ||||||||||||    
T  28086583 agggagtccgatgtaccttagctaggttttcatcggtcaagtaagggatt 28086534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 10702051 - 10702115
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    |||| ||| ||||| ||||| ||||||||||||| || | |||||||||||||||| ||||||||    
T  10702051 agggagtctgatgtaccttacctaggttttcatcggtcatgtaagggattgtactcggggttact 10702115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 10915821 - 10915885
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    |||| ||| ||||| ||||| ||||||||||||| || | |||||||||||||||| ||||||||    
T  10915821 agggagtctgatgtaccttacctaggttttcatcggtcatgtaagggattgtactcggggttact 10915885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 14826664 - 14826740
Alignment:
Q  72 atgtatgatcaagactataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttca 148  Q
    |||||||| ||| |||||||| || |  || || |||||||||||||||||||| | ||||||||| ||||||||||    
T  14826664 atgtatgaacaatactataagtaacacgtaagtttcgtgtctcttgctatccacactagggggatataagaggttca 14826740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 10668995 - 10668933
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggtta 215  Q
    |||| ||||||||| ||||| ||||||||||||| ||   |||||||||||||||| ||||||    
T  10668995 agggagtccgatgtaccttatctaggttttcatcggtcgtgtaagggattgtactcggggtta 10668933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 10882634 - 10882572
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggtta 215  Q
    |||| ||||||||| ||||| ||||||||||||| ||   |||||||||||||||| ||||||    
T  10882634 agggagtccgatgtaccttatctaggttttcatcggtcgtgtaagggattgtactcggggtta 10882572  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 6607 - 6693
Alignment:
Q  71 tatgtatgatcaagactataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcacgccagggg 157  Q
    ||||||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  6607 tatgtatgaacaagactttaagcaagatgtaggtgtcgtgtctcttgctatccacgccagggggatacaagggattcacgccagggg 6693  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 21338505 - 21338591
Alignment:
Q  71 tatgtatgatcaagactataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcacgccagggg 157  Q
    ||||||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  21338505 tatgtatgaacaagactttaagcaagatgtaggtgtcgtgtctcttgctatccacgccagggggatacaaggggttcacaccagggg 21338591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 21888876 - 21888952
Alignment:
Q  72 atgtatgatcaagactataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttca 148  Q
    |||||||||||||||| || ||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||    
T  21888876 atgtatgatcaagactttaggaaagatgtaggtgtcgtgtctcttgctatctacaccagggggatacaagaggttca 21888952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 16878558 - 16878622
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    |||| ||||| ||| ||||||||||||||||||| || |||||||||| ||||||| ||||||||    
T  16878558 agggagtccggtgtaccttagctaggttttcatcggtcaagtaagggaatgtactcggggttact 16878622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 16990691 - 16990755
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    |||| ||||| ||| ||||||||||||||||||| || |||||||||| ||||||| ||||||||    
T  16990691 agggagtccggtgtaccttagctaggttttcatcggtcaagtaagggaatgtactcggggttact 16990755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 22827563 - 22827499
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    |||| ||||||||| |||||| |||||||||||| || |||||||||| ||||||| ||||||||    
T  22827563 agggagtccgatgtaccttagttaggttttcatcggtcaagtaagggaatgtactcggggttact 22827499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 29791097 - 29791152
Alignment:
Q  162 gatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    ||||| |||||||||||  |||||| ||||||||||||||||||||| ||||||||    
T  29791097 gatgtaccttagctaggaattcatcggtaaagtaagggattgtactcggggttact 29791152  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 16262271 - 16262185
Alignment:
Q  72 atgtatgatcaagactataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcacgccaggggg 158  Q
    |||||||| ||||||| ||||  |||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16262271 atgtatgaacaagactttaagccagatgtagatgtcgtgtctcttgctatccacgccaaggggatacaagaggttcacgccaggggg 16262185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 9345606 - 9345527
Alignment:
Q  79 atcaagactataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcacgccaggggg 158  Q
    |||||||||||||  ||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  9345606 atcaagactataatcaagatgtaggtgtcgtgtctcttgctatccatgccagggggatacaagagggtcatgccaggggg 9345527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 9345488 - 9345424
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    |||| ||||||||| ||||||||||||||||||| || | ||| |||||||||||| ||||||||    
T  9345488 agggagtccgatgtaccttagctaggttttcatcggtcatgtatgggattgtactcggggttact 9345424  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 26228369 - 26228320
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagggatt 202  Q
    |||| ||||||||| ||||||||||||||||||| || ||||||||||||    
T  26228369 agggagtccgatgtaccttagctaggttttcatcggtcaagtaagggatt 26228320  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 16262146 - 16262083
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    |||| ||||||||| |||||||||||||| |||| || | |||||||||||||||| ||||||||    
T  16262146 agggagtccgatgtaccttagctaggttt-catcggtcatgtaagggattgtactcggggttact 16262083  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 9340354 - 9340399
Alignment:
Q  105 gtcgtgtctcttgctatccacgccagggggatacaagaggttcacg 150  Q
    |||||||||||||| |||||| | |||||||| |||||||||||||    
T  9340354 gtcgtgtctcttgcaatccacactagggggattcaagaggttcacg 9340399  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 10215751 - 10215830
Alignment:
Q  78 gatcaagactataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcacgccagggg 157  Q
    |||||| ||| |||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  10215751 gatcaaaactttaagcaagatgtaggtgtcgtgtctcttgctatccacgctagggggatacaagaggttcacaccagggg 10215830  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 23308295 - 23308354
Alignment:
Q  158 gtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    ||||||||| ||||||||||||||||||| || |||||||||||||||||| ||||||||    
T  23308295 gtccgatgtaccttagctaggttttcatcggtcaagtaagggattgtactcggggttact 23308354  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 19273367 - 19273469
Alignment:
Q  35 gtggtaatcaactacgtaagttaggtataaacctcctatgtatgatcaagactataagaaagatataggtgtcgtgtctcttgctatccacgccaggggg 134  Q
    |||||||||||  | ||||||||||||||||||| || |||| ||||||||||||||| || ||  |  |||||||||| ||| |||||||| |||||||    
T  19273367 gtggtaatcaatcatgtaagttaggtataaaccttctgtgtacgatcaagactataagtaatatgaacatgtcgtgtcttttgatatccacgtcaggggg 19273466  T
Q  135 ata 137  Q
    |||    
T  19273467 ata 19273469  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 24057954 - 24058018
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    |||| ||| ||||| |||||||||| |||||||| || |||||||||||||||||| ||||||||    
T  24057954 agggagtctgatgtaccttagctagattttcatcggtcaagtaagggattgtactcggggttact 24058018  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 24090413 - 24090477
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    |||| |||||||||  |||||||||||||||||| || | ||| |||||| ||||||||||||||    
T  24090413 agggagtccgatgtatcttagctaggttttcatcggtcatgtatgggattatactcagggttact 24090477  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 43516685 - 43516734
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagggatt 202  Q
    |||| ||| ||||| ||||||||||||||||||| || ||||||||||||    
T  43516685 agggagtctgatgtaccttagctaggttttcatcggtcaagtaagggatt 43516734  T

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Target: scaffold0005 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 22443 - 22366
Alignment:
Q  72 atgtatgatcaagactataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcac 149  Q
    |||||||| |||||||||||| || || || || || |||||||| ||||||||||||||||||||||||||||||||    
T  22443 atgtatgaacaagactataagtaacatgtaagtttcatgtctctttctatccacgccagggggatacaagaggttcac 22366  T

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Target: scaffold0005; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 13045 - 12969
Alignment:
Q  72 atgtatgatcaagactataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttca 148  Q
    |||||||| ||| |||||||| || |  || || |||||||||||||||||||| | ||||||||| ||||||||||    
T  13045 atgtatgaacaatactataagtaacacgtaagtttcgtgtctcttgctatccacactagggggatataagaggttca 12969  T

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Target: scaffold0042 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 10109 - 10173
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    |||| ||||||||| ||||||||||||||||||| || |||||||||||||||||| ||||||||    
T  10109 agggagtccgatgtaccttagctaggttttcatcggtcaagtaagggattgtactcggggttact 10173  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 21231195 - 21231252
Alignment:
Q  101 aggtgtcgtgtctcttgctatccacgccagggggatacaagaggttcacgccaggggg 158  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||| | |||||||    
T  21231195 aggtgtcgtgtctcttgctatccacgctagagggatacaagaggttcatgtcaggggg 21231252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 21217914 - 21217962
Alignment:
Q  100 taggtgtcgtgtctcttgctatccacgccagggggatacaagaggttca 148  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  21217914 taggtgtcgtgtctcttgctattcacgccagggggataaaagaggttca 21217962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 22752777 - 22752730
Alignment:
Q  103 gtgtcgtgtctcttgctatccacgccagggggatacaagaggttcacg 150  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  22752777 gtgtcgtgtctcttgttatccacgccagggggataaaagaggttcacg 22752730  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 29253348 - 29253304
Alignment:
Q  158 gtccgatgttccttagctaggttttcatcagtaaagtaagggatt 202  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||    
T  29253348 gtccgatgtaccttagctaggttttcatcagtcaagtaagggatt 29253304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 37984722 - 37984662
Alignment:
Q  158 gtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggttactg 218  Q
    ||||||||| |||||||||||  |||||| || |||||| ||||||||||| |||||||||    
T  37984722 gtccgatgtaccttagctaggaattcatcggtcaagtaaaggattgtactcggggttactg 37984662  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 22801182 - 22801094
Alignment:
Q  72 atgtatgatcaagactataagaaagatataggtgtcgtgtctcttgctatccacgcc-aggggga-tacaagaggttcacgccaggggg 158  Q
    |||||||| ||||||| |||| ||||| |||||||||||| |||||| ||||| ||| ||||||| | |||||||||||||||||||||    
T  22801182 atgtatgaacaagactttaagcaagatgtaggtgtcgtgtttcttgcgatccatgccaagggggatttcaagaggttcacgccaggggg 22801094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 21950586 - 21950542
Alignment:
Q  158 gtccgatgttccttagctaggttttcatcagtaaagtaagggatt 202  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||    
T  21950586 gtccgatgtaccttagctaggttttcatcggtcaagtaagggatt 21950542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 3575787 - 3575742
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagg 198  Q
    |||| ||||||||| ||||||||||||||||||| || ||||||||    
T  3575787 agggagtccgatgtaccttagctaggttttcatcggtcaagtaagg 3575742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 22805840 - 22805791
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagggatt 202  Q
    |||| ||||||||| | ||||||||||||||||| || ||||||||||||    
T  22805840 agggagtccgatgtactttagctaggttttcatcggtcaagtaagggatt 22805791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 11245545 - 11245604
Alignment:
Q  158 gtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    ||||||||| |||||||||||  |||||| ||||||||||||||||||||| ||||||||    
T  11245545 gtccgatgtaccttagctaggaattcatcggtaaagtaagggattgtactcggggttact 11245604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 15561739 - 15561823
Alignment:
Q  75 tatgatcaagactataagaaagatataggtgtcgtgtctct-tgctatccacgcc-agggggatacaagaggttcacgccagggg 157  Q
    |||||||||||||||||| ||||| |||||||||||||| |  | |||||||||| |||||||||| |||||||| ||| |||||    
T  15561739 tatgatcaagactataagcaagatgtaggtgtcgtgtctttccgttatccacgccaagggggatacgagaggttctcgcaagggg 15561823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 39888657 - 39888593
Alignment:
Q  153 agggggtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    |||| ||||| ||| ||||||||||||||||||| || |||||||||| ||||||| ||||||||    
T  39888657 agggagtccggtgtaccttagctaggttttcatcggtcaagtaagggaatgtactcggggttact 39888593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 3083434 - 3083385
Alignment:
Q  168 ccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    ||||||||||||||||||| || || ||||||| ||||||| ||||||||    
T  3083434 ccttagctaggttttcatcggtcaattaagggaatgtactcggggttact 3083385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 5510 - 5569
Alignment:
Q  158 gtccgatgttccttagctaggttttcatcagtaaagtaagggattgtactcagggttact 217  Q
    |||| |||| |||||||||||  |||||| ||||||||||||||||||||| ||||||||    
T  5510 gtccaatgtaccttagctaggaattcatcggtaaagtaagggattgtactcggggttact 5569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 23474 - 23550
Alignment:
Q  72 atgtatgatcaagactataagaaagatataggtgtcgtgtctcttgctatccacgccagggggatacaagaggttca 148  Q
    |||||||| ||| |||||||| || |  || || |||||||||||||||||||| | ||||||||| ||||||||||    
T  23474 atgtatgaacaatactataagtaacacgtaagtttcgtgtctcttgctatccacactagggggatataagaggttca 23550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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