View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9696_1D_low_36 (Length: 212)
Name: NF9696_1D_low_36
Description: NF9696_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_1D_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 205
Target Start/End: Original strand, 2619250 - 2619453
Alignment:
| Q |
2 |
ggtgtttgtgacgaataatttgattagggttttgaataagtatgatcataagcagttttactatattgggagtttatcagagagtcatttgcagaatata |
101 |
Q |
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| T |
2619250 |
ggtgtttgtgacgaataatttgattagggttttgaataagtatgatcataagcagttttactatattgggagtttatcagagagtcatttgcagaatata |
2619349 |
T |
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| Q |
102 |
tatttttcttatggtatggcttatggtggtggtggatttgctattagttatggtttggcaaaagctctagtgaaaatgcaggatcgttgtattcatagat |
201 |
Q |
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| T |
2619350 |
tatttttcttatggtatggcttatggtggtggtggatttgctattagttatggtttggcaaaagctctagtgaaaatgcaggatcgttgtattcatagat |
2619449 |
T |
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| Q |
202 |
atcc |
205 |
Q |
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|||| |
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| T |
2619450 |
atcc |
2619453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 11091991 - 11092113
Alignment:
| Q |
30 |
gttttgaataagtatgatcataagcagttttactatattgggagtttatcagagagtcatttgcagaatatatatttttcttatggtatggcttatggtg |
129 |
Q |
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| T |
11091991 |
gttttgaagaaatatgatcataatcaattttattacattggtagtaattcagagagtcatttgcagaatatttatttttcttataatatggcttatggtg |
11092090 |
T |
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| Q |
130 |
gtggtggatttgctattagttat |
152 |
Q |
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| T |
11092091 |
gtggtggatttgctataagttat |
11092113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 45 - 196
Target Start/End: Complemental strand, 41319937 - 41319786
Alignment:
| Q |
45 |
gatcataagcagttttactatattgggagtttatcagagagtcatttgcagaatatatatttttcttatggtatggcttatggtggtggtggatttgcta |
144 |
Q |
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| T |
41319937 |
gatcataatcaattttattacattggaagtttatctgaaagtcatttgcagaatattttcttttcctatggtatggcttatggtggtggtggatttgcta |
41319838 |
T |
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| Q |
145 |
ttagttatggtttggcaaaagctctagtgaaaatgcaggatcgttgtattca |
196 |
Q |
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| T |
41319837 |
taagctatcctttggcgaaagcgcttcacaaaatgcaggatcggtgtattca |
41319786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 29613173 - 29613105
Alignment:
| Q |
84 |
agtcatttgcagaatatatatttttcttatggtatggcttatggtggtggtggatttgctattagttat |
152 |
Q |
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| T |
29613173 |
agtcactttcagaatattaatttttcttataatatggcttatggtggtggtggatttgctattagttat |
29613105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 40945215 - 40945102
Alignment:
| Q |
39 |
aagtatgatcataagcagttttactatattgggagtttatcagagagtcatttgcagaatatatatttttcttatggtatggcttatggtggtggtggat |
138 |
Q |
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|||||||| |||| || ||||| ||| |||| |||| || ||||||||| | |||||||| ||||||| |||| |||||| |||||||||||||||| |
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| T |
40945215 |
aagtatgaccatagacatttttattatgttggtagttcttctgagagtcatgtccagaatattcatttttcatatgctatggcatatggtggtggtggat |
40945116 |
T |
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| Q |
139 |
ttgctattagttat |
152 |
Q |
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||||||| |||||| |
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| T |
40945115 |
ttgctataagttat |
40945102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 22776559 - 22776495
Alignment:
| Q |
81 |
gagagtcatttgcagaatatatatttttcttatggtatggcttatggtggtggtggatttgctat |
145 |
Q |
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| T |
22776559 |
gagagtcatgttcagaacatacatttctcgtatgctatggcttatggtggtggaggatttgctat |
22776495 |
T |
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