View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9696_1D_low_39 (Length: 207)
Name: NF9696_1D_low_39
Description: NF9696_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_1D_low_39 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 17431 - 17277
Alignment:
| Q |
45 |
gttgcaaattgggttgtgcttaccaagtaacaaaaagttaaacaatgaatagtaggcaatcttgaaaggccataagtgaatggactatatttagagattg |
144 |
Q |
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| T |
17431 |
gttgcaaattgggttgtgcttactaagtaacaaaaagttaaacaatgaatagtaggcaatcttgaaaggccataagtgaatggactatatttagagattg |
17332 |
T |
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| Q |
145 |
caagcaacaaaagttcagatgaccattttatgggttgaattaatccctctttcat |
199 |
Q |
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| T |
17331 |
caagtaacaaaagttcagatgaccattttatgggttgaattaatccctctttcat |
17277 |
T |
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Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 68 - 164
Target Start/End: Original strand, 16381881 - 16381977
Alignment:
| Q |
68 |
caagtaacaaaaagttaaacaatgaatagtaggcaatcttgaaaggccataagtgaatggactatatttagagattgcaagcaacaaaagttcagat |
164 |
Q |
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| T |
16381881 |
caagtgacaaaaggttaaacaatgaacaataggcaatcttgaaatcccataagtgaatggactatatttagatattgcaaacaacaaaagttcagat |
16381977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 17579442 - 17579547
Alignment:
| Q |
69 |
aagtaacaaaaagttaaacaatgaatagtaggcaatcttgaaaggccataagtgaatggactatatttagagattgcaagcaacaaaagttcagatgacc |
168 |
Q |
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| T |
17579442 |
aagtagcaaaaggttagacaatgaataatgggcaatcttgaaatcccataagtgaatgggctatacttagagattccaagcaagcaaagttcagatgtcc |
17579541 |
T |
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| Q |
169 |
atttta |
174 |
Q |
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| T |
17579542 |
acttta |
17579547 |
T |
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