View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9696_1D_low_5 (Length: 468)
Name: NF9696_1D_low_5
Description: NF9696_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_1D_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 160 - 454
Target Start/End: Complemental strand, 23429767 - 23429472
Alignment:
| Q |
160 |
tcgtgtgcattgacaatgctaaagttttgtgggacaaactgtgtcaccaattcactaaatgtactcatttcaaacgttttgatctccttnnnnnnnntca |
259 |
Q |
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| T |
23429767 |
tcgtgtacattgacaatgctaaagttttgtgggacaacctgtgtcaccaatttaccaaatttactcatttcaaactttttgatctccttcaagaaattca |
23429668 |
T |
|
| Q |
260 |
ctccatgaaacaaggagaatgatatgttaatgagtttttcaccgacacaaaa-ttgtttgtgaaaatttagaggatttgcgttcaatccctatatgttca |
358 |
Q |
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| T |
23429667 |
ctccatgaaacaaggagaatgatatgttaatgagtttttcaccgacacaaaaattgtttgtgaaaatttagagaatttgcgttcaatccctatccaatct |
23429568 |
T |
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| Q |
359 |
tgcaatgttagatgtaattgtgatgcatttagaattatgcacaaccaatgcaagattgagtatgacatccgttttttgaaagggttatatgatgat |
454 |
Q |
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| T |
23429567 |
tgcaatgttagatgcaattgtgatgcctttagaattatgcgcaaccaatgcgagattgagtatgtcatccgttttctgaaagggttatatgttgat |
23429472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 23430029 - 23429894
Alignment:
| Q |
24 |
ctgtcaatgattttactcaatctccatgttatcttcatcctgctaaagtataggctacgttttggtttcaccttaattaaataacacaaattaccattca |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23430029 |
ctgtcaatgattttactcaatctccatgttatcttcatcctgctgaaatataggccaagttttggtttcaccttaattaaataacacaaattaccattca |
23429930 |
T |
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| Q |
124 |
ttgagccgcaatatgaaatgttcctcatatcaaaga |
159 |
Q |
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| T |
23429929 |
tggagccgcaatatgaaatgttcctcatatcaaaga |
23429894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 3811538 - 3811656
Alignment:
| Q |
24 |
ctgtcaatgattttactcaatctccatgttatcttcatcctgctaa-agtataggctacgttttggtttcaccttaattaaataacacaaattaccattc |
122 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||| | | | | ||||| |||||| ||||| || ||||||||||||| ||||||||||| |
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| T |
3811538 |
ctgtcaatgattttacccaatctccatattatcttcatcctggtgagaatccaggctctgttttgatttcatctcaattaaataacaccaattaccattc |
3811637 |
T |
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| Q |
123 |
attgagccgcaatatgaaa |
141 |
Q |
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| T |
3811638 |
atggagccgcaacatgaaa |
3811656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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