View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9696_1D_low_7 (Length: 441)
Name: NF9696_1D_low_7
Description: NF9696_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_1D_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 249 - 357
Target Start/End: Complemental strand, 6242973 - 6242865
Alignment:
| Q |
249 |
aataacattcttgatcctttttggaattcattgatagagttcttttttattcttatagcacatcaaagcaaagattaacatccacaaacccaaataaatc |
348 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6242973 |
aataacattcttgatcctttttggaatccattgaaagagttcttttcgattcttatagaacatcaaagcaaagattaagatccacaaacccaaataaatc |
6242874 |
T |
|
| Q |
349 |
caagcaatt |
357 |
Q |
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||||||||| |
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| T |
6242873 |
caagcaatt |
6242865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 227 - 357
Target Start/End: Original strand, 6325675 - 6325805
Alignment:
| Q |
227 |
taccactctcactcttcccctcaataacattcttgatcctttttggaattcattgatagagttcttttttattcttatagcacatcaaagcaaagattaa |
326 |
Q |
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||||||||||| | || ||||||| ||| ||||||||||||| |||||| |||||||||||||| |||||| ||||||||||||||||||||||||| || |
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| T |
6325675 |
taccactctcagttttaccctcaaaaactttcttgatcctttctggaatccattgatagagttcatttttactcttatagcacatcaaagcaaagataaa |
6325774 |
T |
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| Q |
327 |
catccacaaacccaaataaatccaagcaatt |
357 |
Q |
| |
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||||| ||||||||||||||||| |||||| |
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| T |
6325775 |
gatccaaaaacccaaataaatccatgcaatt |
6325805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 244 - 357
Target Start/End: Original strand, 6346286 - 6346399
Alignment:
| Q |
244 |
ccctcaataacattcttgatcctttttggaattcattgatagagttcttttttattcttatagcacatcaaagcaaagattaacatccacaaacccaaat |
343 |
Q |
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||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||| |||||| |
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| T |
6346286 |
ccctcaaaaacattcttgatcctttgtggaatcatttgatagagttcttttttattctcatagcacatcaaagcaaagagtaagatccacaagcccaaaa |
6346385 |
T |
|
| Q |
344 |
aaatccaagcaatt |
357 |
Q |
| |
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|||||||||||||| |
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| T |
6346386 |
aaatccaagcaatt |
6346399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 256 - 357
Target Start/End: Original strand, 6333181 - 6333282
Alignment:
| Q |
256 |
ttcttgatcctttttggaattcattgatagagttcttttttattcttatagcacatcaaagcaaagattaacatccacaaacccaaataaatccaagcaa |
355 |
Q |
| |
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||||||||||||| |||||| ||||||||| ||| |||||| ||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |
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| T |
6333181 |
ttcttgatcctttctggaatcaattgatagatttcatttttactcttatagcacatcaaagcaaagatgaagatcaacaaacccaaataaatccaagcaa |
6333280 |
T |
|
| Q |
356 |
tt |
357 |
Q |
| |
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|| |
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|
| T |
6333281 |
tt |
6333282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 357
Target Start/End: Complemental strand, 6219827 - 6219711
Alignment:
| Q |
244 |
ccctcaataacattcttgatcctttttggaat---tcattgatagagttcttttttattcttatagcacatcaaagcaaagattaacatccacaaaccca |
340 |
Q |
| |
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||||||| ||| ||||||||||||| |||||| | ||||||||| |||||| ||||| |||||||||||||| ||||| ||| |||||||| | || |
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| T |
6219827 |
ccctcaaaaactttcttgatcctttctggaatcaatatttgatagagctcttttcgattctcatagcacatcaaagaaaagagtaagatccacaagcaca |
6219728 |
T |
|
| Q |
341 |
aataaatccaagcaatt |
357 |
Q |
| |
|
|| |||||||||||||| |
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|
| T |
6219727 |
aaaaaatccaagcaatt |
6219711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 356
Target Start/End: Complemental strand, 6219310 - 6219198
Alignment:
| Q |
244 |
ccctcaataacattcttgatcctttttggaattcattgatagagttcttttttattcttatagcacatcaaagcaaagattaacatccacaaacccaaat |
343 |
Q |
| |
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||||||||| |||||||||||||| ||||| |||||||||||||||| ||| ||||||| |||||||| ||| ||||| ||| ||| || |||| |
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| T |
6219310 |
ccctcaatagaattcttgatcctttggggaatcatttgatagagttcttttcgatttttatagcccatcaaagaaaatattaagatcaacagcccgaaat |
6219211 |
T |
|
| Q |
344 |
aaatccaagcaat |
356 |
Q |
| |
|
|||||||||||| |
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|
| T |
6219210 |
caatccaagcaat |
6219198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 6243046 - 6243006
Alignment:
| Q |
154 |
aaatgcaatcaattgctctatacaggaagcgattcaactcc |
194 |
Q |
| |
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|||||||| ||||||||||| |||||||| ||||||||||| |
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| T |
6243046 |
aaatgcaaacaattgctctagacaggaagtgattcaactcc |
6243006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 33269541 - 33269579
Alignment:
| Q |
1 |
gaacctgtggacaagcagcaacttgcattgcaagatcat |
39 |
Q |
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| T |
33269541 |
gaacctgtggacaagcagcaacttgcattgcaagatcat |
33269579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 33414568 - 33414606
Alignment:
| Q |
1 |
gaacctgtggacaagcagcaacttgcattgcaagatcat |
39 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
33414568 |
gaacctgtggacaagcagcaacttgcattgcaagatcat |
33414606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17447981 - 17447943
Alignment:
| Q |
1 |
gaacctgtggacaagcagcaacttgcattgcaagatcat |
39 |
Q |
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| T |
17447981 |
gaacctgtggaaaagcagccacttgcattgcaagatcat |
17447943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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