View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9696_2D_high_2 (Length: 432)
Name: NF9696_2D_high_2
Description: NF9696_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_2D_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Original strand, 52796253 - 52796658
Alignment:
| Q |
17 |
aggtttgtcaccaccacacgagtcctttacaatactgtctcgtagacatggtcctatcatgaccctttggctaggttccatgtgcaccgtagttgtctct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52796253 |
aggtttgtcaccaccacacgagtcctttacaatactgtctcgtagacatggtcctatcatgaccctttggctaggttccatgtgcaccgtagttgtctct |
52796352 |
T |
|
| Q |
117 |
tcctgtgaagcagcccgtgacatgttcaaaaacaacgatgcggctcttgcaggaaggaaggtttatgaggccatgaaagggaatcataaccatggcagtg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52796353 |
tcctgtgaagcagcccgtgacatgttcaaaaacaacgatgcggctcttgcaggaaggaaggtttatgaggccatgaaagggaatcataaccatggcagtg |
52796452 |
T |
|
| Q |
217 |
aaggttcactcataacttctcaatatgatgcgcactggcgcatgcttaggcgcttgagcaccactgagttctttgtgactagtcgcttagacgctatgcg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52796453 |
aaggttcactcataacttctcaatatgatgcgcactggcgcatgcttaggcgcttgagcaccactgagttctttgtgactagtcgcttagacgctatgca |
52796552 |
T |
|
| Q |
317 |
aggtgtgcgtgcaaaatgcatagaccgcatggttcacttgatagatgaagttgctgcggaatctagtaattgtgccgttgatgttggcaaattctttttc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52796553 |
aggtgtgcgtgcaaaatgcatagaccgcatggttcacttgatagatgaagctgctgcggaatctagtaattgtgccgttgatgttggcaaattctttttc |
52796652 |
T |
|
| Q |
417 |
ttgatg |
422 |
Q |
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|||||| |
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| T |
52796653 |
ttgatg |
52796658 |
T |
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