View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9696_2D_low_1 (Length: 668)

Name: NF9696_2D_low_1
Description: NF9696_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9696_2D_low_1
NF9696_2D_low_1
[»] chr6 (31 HSPs)
chr6 (26-442)||(26650942-26651355)
chr6 (26-442)||(26756910-26757323)
chr6 (54-335)||(27422500-27422784)
chr6 (21-198)||(26629440-26629617)
chr6 (21-198)||(26735416-26735593)
chr6 (452-646)||(26651937-26652130)
chr6 (452-646)||(26757905-26758098)
chr6 (195-442)||(26966097-26966350)
chr6 (448-651)||(27421272-27421474)
chr6 (27-260)||(26964184-26964411)
chr6 (463-632)||(31289644-31289812)
chr6 (201-442)||(26631459-26631706)
chr6 (201-442)||(26737434-26737681)
chr6 (202-377)||(27714070-27714251)
chr6 (94-193)||(31291166-31291264)
chr6 (202-377)||(27702303-27702484)
chr6 (286-398)||(31289405-31289518)
chr6 (445-545)||(26632565-26632665)
chr6 (445-545)||(26738541-26738641)
chr6 (112-180)||(27652530-27652598)
chr6 (80-165)||(26966007-26966092)
chr6 (203-377)||(26890066-26890246)
chr6 (218-275)||(26640690-26640747)
chr6 (218-275)||(26746656-26746713)
chr6 (202-364)||(26628012-26628179)
chr6 (202-364)||(26733989-26734156)
chr6 (218-355)||(26828382-26828524)
chr6 (250-358)||(27652226-27652339)
chr6 (274-368)||(26853696-26853790)
chr6 (282-368)||(27586682-27586768)
chr6 (202-264)||(27652343-27652405)
[»] scaffold0003 (2 HSPs)
scaffold0003 (54-335)||(64579-64863)
scaffold0003 (448-651)||(65889-66091)
[»] chr4 (3 HSPs)
chr4 (111-193)||(18692628-18692710)
chr4 (220-383)||(5083105-5083274)
chr4 (153-193)||(18674557-18674597)
[»] chr8 (1 HSPs)
chr8 (202-377)||(29269963-29270144)
[»] scaffold0349 (1 HSPs)
scaffold0349 (202-377)||(17693-17874)
[»] chr3 (1 HSPs)
chr3 (482-587)||(7144851-7144956)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-116; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 26 - 442
Target Start/End: Original strand, 26650942 - 26651355
Alignment:
Q  26 tttcctttactcttatgacttgtaaatcttttaaaatgaatttcatttttcttcttcttattttgaccgtaacatgttagaattttttgttttctgcata 125  Q
    ||||||||| || ||||||||  |||| |||||||||||||||||||| ||        |||||||||  ||| ||| |||| |||||| ||| ||||||    
T  26650942 tttcctttattcatatgacttaaaaatattttaaaatgaatttcatttctc--------attttgaccaaaacgtgtgagaaatttttggtttttgcata 26651033  T
Q  126 atggtttgtatgacaatttcaagaatggatcctctcatgttgaaataaacatgaggatgttatgtttcaaattcgggcaacttttttgtaagcaaaacta 225  Q
     |||||||| |||||||||||| | ||||||||||| ||||||||||||||| |||  |||||||||||||||| ||||| |||| | ||| ||||||||    
T  26651034 gtggtttgtttgacaatttcaaaagtggatcctctcttgttgaaataaacataaggtagttatgtttcaaattcaggcaagttttctttaaccaaaacta 26651133  T
Q  226 agcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcgacatgtctagagatttctcgcacca 320  Q
     | ||| ||||||||||| ||||||||||||||||||||||||||||||     | |||||||||||||||||||| |||||||||||||||||||||||    
T  26651134 cgaattaacttgttctttgtctgtacattgtcaggaaaccatctgtagtcacctgtctatgtgcattgtcatgcgatatgtctagagatttctcgcacca 26651233  T
Q  321 cagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttgagctcagttatactggtttcagaattttgagaatttcaatctcagtacacaa 420  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| |||||||||||    
T  26651234 cagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgagcttagttatactggttgcagatttttgagaatttcaatttcagtacacaa 26651333  T
Q  421 gttggaatcctaatagaaagag 442  Q
     |||||||||| ||||||||||    
T  26651334 attggaatccttatagaaagag 26651355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 26 - 442
Target Start/End: Original strand, 26756910 - 26757323
Alignment:
Q  26 tttcctttactcttatgacttgtaaatcttttaaaatgaatttcatttttcttcttcttattttgaccgtaacatgttagaattttttgttttctgcata 125  Q
    ||||||||| || ||||||||  |||| |||||||||||||||||||| ||        |||||||||  ||| ||| |||| |||||| ||| ||||||    
T  26756910 tttcctttattcatatgacttaaaaatattttaaaatgaatttcatttctc--------attttgaccaaaacgtgtgagaaatttttggtttttgcata 26757001  T
Q  126 atggtttgtatgacaatttcaagaatggatcctctcatgttgaaataaacatgaggatgttatgtttcaaattcgggcaacttttttgtaagcaaaacta 225  Q
     |||||||| |||||||||||| | ||||||||||| ||||||||||||||| |||  |||||||||||||||| ||||| |||| | ||| ||||||||    
T  26757002 gtggtttgtttgacaatttcaaaagtggatcctctcttgttgaaataaacataaggtagttatgtttcaaattcaggcaagttttctttaaccaaaacta 26757101  T
Q  226 agcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcgacatgtctagagatttctcgcacca 320  Q
     | ||| ||||||||||| ||||||||||||||||||||||||||||||     | |||||||||||||||||||| |||||||||||||||||||||||    
T  26757102 cgaattaacttgttctttgtctgtacattgtcaggaaaccatctgtagtcacctgtctatgtgcattgtcatgcgatatgtctagagatttctcgcacca 26757201  T
Q  321 cagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttgagctcagttatactggtttcagaattttgagaatttcaatctcagtacacaa 420  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| |||||||||||    
T  26757202 cagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgagcttagttatactggttgcagatttttgagaatttcaatttcagtacacaa 26757301  T
Q  421 gttggaatcctaatagaaagag 442  Q
     |||||||||| ||||||||||    
T  26757302 attggaatccttatagaaagag 26757323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 54 - 335
Target Start/End: Complemental strand, 27422784 - 27422500
Alignment:
Q  54 ttttaaaatgaatttcatttttcttcttcttattttgaccgtaacatgttagaattttttgttttctgcataatggtttgtatgacaatttcaagaatgg 153  Q
    ||||||| |||||||||||||  ||  ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27422784 ttttaaactgaatttcattttattt--tctcattttgaccgtaacatgtcagaattttttgttttctgcataatggtttgtatgacaatttcaagagtgg 27422687  T
Q  154 atcctctcatgttgaaataaacatgaggatgttatgtttcaaattcgggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacat 253  Q
    || ||||| ||||||||||||||| | ||  |||||||| ||| || |||||||||| | |||  ||||||||||||||||||||||||| |||||||||    
T  27422686 attctctcttgttgaaataaacataaagaaattatgtttgaaactcaggcaacttttctctaacgaaaactaagcatttacttgttctttgtctgtacat 27422587  T
Q  254 tgtcaggaaaccatctgtag-----tggctatgtgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggtt 335  Q
    ||||||||||||||||||||     ||||||| ||||||||||||||||||||||||||||| |||||| || |||||| |||||||    
T  27422586 tgtcaggaaaccatctgtagtcatctggctatttgcattgtcatgcgacatgtctagagattgctcgcagcatagaatccgttggtt 27422500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 26629440 - 26629617
Alignment:
Q  21 taatgtttcctttactcttatgacttgtaaatcttttaaaatgaatttcatttttcttcttcttattttgaccgtaacatgttagaattttttgttttct 120  Q
    |||| ||||||||| | |||||| ||||||||| ||||||||||||||||||||| || |||| ||||||||||||||||  ||||||||||||||||||    
T  26629440 taatatttcctttattgttatgagttgtaaatcatttaaaatgaatttcatttttgtttttctcattttgaccgtaacattgtagaattttttgttttct 26629539  T
Q  121 gcataatggtttgtatgacaatttcaagaatggatcctctcatgttgaaataaacatgaggatgttatgtttcaaatt 198  Q
     ||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||||    
T  26629540 acataatggtttatatgacaatttcaagagtggatcctctcatgttggaataaacataaggaagttatgtttcaaatt 26629617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 26735416 - 26735593
Alignment:
Q  21 taatgtttcctttactcttatgacttgtaaatcttttaaaatgaatttcatttttcttcttcttattttgaccgtaacatgttagaattttttgttttct 120  Q
    |||| ||||||||| | |||||| ||||||||| ||||||||||||||||||||| || |||| ||||||||||||||||  ||||||||||||||||||    
T  26735416 taatatttcctttattgttatgagttgtaaatcatttaaaatgaatttcatttttgtttttctcattttgaccgtaacattgtagaattttttgttttct 26735515  T
Q  121 gcataatggtttgtatgacaatttcaagaatggatcctctcatgttgaaataaacatgaggatgttatgtttcaaatt 198  Q
     ||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||||    
T  26735516 acataatggtttatatgacaatttcaagagtggatcctctcatgttggaataaacataaggaagttatgtttcaaatt 26735593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 452 - 646
Target Start/End: Original strand, 26651937 - 26652130
Alignment:
Q  452 gtggaaaatttacagctgaagcaacctgtatcagatgttgttaaatggttgccagagagtgcaacaggttttcggtgaaaggatgttatcaagatctgtg 551  Q
    |||| ||||||||||||| || |||||||||  ||||||| |||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||    
T  26651937 gtggcaaatttacagctgcagaaacctgtattggatgttgataaatggttgccagagagtgcaacagattctcggtgaaaggatgttatgaagatctgtg 26652036  T
Q  552 aaatttgcgttttcgcaaagatttcaacaatgaattattgaaggcactgcagagattatggctcacattagtgccaaaaaatattgtgtttggtt 646  Q
    | |||||||||||  ||| ||||||||  ||||||||||||||||| |||||||||||||| |||||| | |||||||||| | |||||||||||    
T  26652037 atatttgcgtttttccaatgatttcaaggatgaattattgaaggcagtgcagagattatggttcacatcattgccaaaaaa-aatgtgtttggtt 26652130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 452 - 646
Target Start/End: Original strand, 26757905 - 26758098
Alignment:
Q  452 gtggaaaatttacagctgaagcaacctgtatcagatgttgttaaatggttgccagagagtgcaacaggttttcggtgaaaggatgttatcaagatctgtg 551  Q
    |||| ||||||||||||| || |||||||||  ||||||| |||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||    
T  26757905 gtggcaaatttacagctgcagaaacctgtattggatgttgataaatggttgccagagagtgcaacagattctcggtgaaaggatgttatgaagatctgtg 26758004  T
Q  552 aaatttgcgttttcgcaaagatttcaacaatgaattattgaaggcactgcagagattatggctcacattagtgccaaaaaatattgtgtttggtt 646  Q
    | |||||||||||  ||| ||||||||  ||||||||||||||||| |||||||||||||| |||||| | |||||||||| | |||||||||||    
T  26758005 atatttgcgtttttccaatgatttcaaggatgaattattgaaggcagtgcagagattatggttcacatcattgccaaaaaa-aatgtgtttggtt 26758098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 195 - 442
Target Start/End: Original strand, 26966097 - 26966350
Alignment:
Q  195 aattcgggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgt 289  Q
    ||||| |||||||||| |  || ||||||||||| ||||||||||||||  |||||||||||||||| ||||||||||||     |||||| |||| |||    
T  26966097 aattcaggcaacttttctcaaaccaaaactaagcttttacttgttctttgactgtacattgtcaggacaccatctgtagtcatctggctatttgcactgt 26966196  T
Q  290 catgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgc-tttgagctcagttatactggtttc 388  Q
    ||||||||||||||||||||| || ||||||||||||| |||||||||| ||||| |||| || ||||||||  | ||| | ||||||| |||||||| |    
T  26966197 catgcgacatgtctagagattgcttgcaccacagaatccgttggttgttcgaaagggcagcgaataatgctacacttttcatctcagttttactggttgc 26966296  T
Q  389 agaattttgagaatttcaatctcagtacacaagttggaatcctaatagaaagag 442  Q
    ||| |||  ||||||||||||| |||||| || |||||||||| ||||||||||    
T  26966297 agagtttgaagaatttcaatcttagtacaaaaattggaatccttatagaaagag 26966350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 448 - 651
Target Start/End: Complemental strand, 27421474 - 27421272
Alignment:
Q  448 aatggtggaaaatttacagctgaagcaacctgtatcagatgttgttaaatggttgccagagagtgcaacaggttttcggtgaaaggatgttatcaagatc 547  Q
    |||||||||||||||| ||||| || |||||||||||||| ||||||||| |||||| |||||| || ||| || || | |||||||||||||||||| |    
T  27421474 aatggtggaaaatttatagctgcaggaacctgtatcagattttgttaaattgttgccggagagtacagcagattctcagagaaaggatgttatcaagagc 27421375  T
Q  548 tgtgaaatttgcgttttcgcaaagatttcaacaatgaattattgaaggcactgcagagattatggctcacattagtgccaaaaaatattgtgtttggttg 647  Q
    |||||||||||||||||  ||| |||||| || ||||||||||||||||| |||| |||||||||||||||| ||||| ||||||  |||||| ||||||    
T  27421374 tgtgaaatttgcgtttt-tcaatgatttcgacgatgaattattgaaggcagtgcatagattatggctcacatcagtgctaaaaaaagttgtgtatggttg 27421276  T
Q  648 gaga 651  Q
    ||||    
T  27421275 gaga 27421272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 27 - 260
Target Start/End: Original strand, 26964184 - 26964411
Alignment:
Q  27 ttcctttactcttatgacttgtaaatcttttaaaatgaatttcatttttcttcttcttattttgaccgtaacatgttagaattttttgttttctgcataa 126  Q
    |||||||| || |||||||| |||||||||||||||||||||||||||  ||||  ||  |||||||| ||||||||||||||||||||||| ||||||     
T  26964184 ttcctttattcatatgacttataaatcttttaaaatgaatttcatttta-ttctcatt--tttgaccgaaacatgttagaattttttgtttt-tgcatag 26964279  T
Q  127 tggtttgtatgacaatttcaagaatggatcctctcatgttgaaataaacatgaggatgttatgtttcaaattcgggcaacttttttgtaagcaaaactaa 226  Q
    ||||||||| ||||||||||| | |||||||||||  |||||||||||||| |||  |||||||||||||||| ||||| || | | ||| ||||||||     
T  26964280 tggtttgtacgacaatttcaaaagtggatcctctc--gttgaaataaacataaggtagttatgtttcaaattcaggcaagttatctctaaccaaaactac 26964377  T
Q  227 gcatttacttgttctttatctgtacattgtcagg 260  Q
      |||||||| |||||| ||||||||||||||||    
T  26964378 aaatttactttttctttgtctgtacattgtcagg 26964411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 463 - 632
Target Start/End: Original strand, 31289644 - 31289812
Alignment:
Q  463 acagctgaagcaacctgtatcagatgttgttaaatggttgccagagagtgcaacaggttttcggtgaaaggatgttatcaagatctgtgaaatttgcgtt 562  Q
    ||||||| |||||||||||   ||||||| |||||||||||||||||||||||||  || ||||||||||| |||||||||||||||||| |||||| ||    
T  31289644 acagctgcagcaacctgtactggatgttgataaatggttgccagagagtgcaacatattctcggtgaaaggttgttatcaagatctgtgatatttgcatt 31289743  T
Q  563 ttcgcaaagatttcaacaatgaattattgaaggcactgcagagattatggctcacattagtgccaaaaaa 632  Q
    ||| ||| ||||||||  ||||||||||||||||| |||||||| |||||||||||| ||||||||||||    
T  31289744 ttcccaatgatttcaatgatgaattattgaaggcagtgcagaga-tatggctcacatcagtgccaaaaaa 31289812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 201 - 442
Target Start/End: Original strand, 26631459 - 26631706
Alignment:
Q  201 ggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcg 295  Q
    |||||||||| | ||| |||||| ||||||||||||| ||||    |||||||| ||||||| |||||||||||     ||| |  ||||||||| | |     
T  26631459 ggcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggccacttgcattgtcct-ca 26631557  T
Q  296 acatgtctagagatttctcgcaccacagaatctgttgg-ttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagttatactggtttcagaat 393  Q
    |||||||||||| || |||||| ||||||||| |||   |||||  |||| ||||||||||||||||||||| | |||||||||||||||||| |||| |    
T  26631558 acatgtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaatgctatgcttcgcagctcagttatactggttgcagagt 26631657  T
Q  394 tttgagaatttcaatctcagtacacaagttggaatcctaatagaaagag 442  Q
    ||||||||||||||| | ||||||||| |||||||||  ||||||||||    
T  26631658 tttgagaatttcaatattagtacacaaattggaatccgtatagaaagag 26631706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 201 - 442
Target Start/End: Original strand, 26737434 - 26737681
Alignment:
Q  201 ggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcg 295  Q
    |||||||||| | ||| |||||| ||||||||||||| ||||    |||||||| ||||||| |||||||||||     ||| |  ||||||||| | |     
T  26737434 ggcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggccacttgcattgtcct-ca 26737532  T
Q  296 acatgtctagagatttctcgcaccacagaatctgttgg-ttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagttatactggtttcagaat 393  Q
    |||||||||||| || |||||| ||||||||| |||   |||||  |||| ||||||||||||||||||||| | |||||||||||||||||| |||| |    
T  26737533 acatgtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaatgctatgcttcgcagctcagttatactggttgcagagt 26737632  T
Q  394 tttgagaatttcaatctcagtacacaagttggaatcctaatagaaagag 442  Q
    ||||||||||||||| | ||||||||| |||||||||  ||||||||||    
T  26737633 tttgagaatttcaatattagtacacaaattggaatccgtatagaaagag 26737681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 202 - 377
Target Start/End: Complemental strand, 27714251 - 27714070
Alignment:
Q  202 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtag-----tggctatgtgcattgtcatgcga 296  Q
    ||||||||| | ||| |||||||||| |||| ||||||||||  |||||||||||||||||||||  |||||     ||||||| |||||||||||||||    
T  27714251 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtcatgcga 27714152  T
Q  297 catgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagtt 377  Q
    || |||||||| || ||  || | ||||||| |||||||||| ||||| |||| |||||||| ||||||||| |||||||||    
T  27714151 caagtctagaggttgcttacagcgcagaatccgttggttgttcgaaagggcagcgagtaatgatatgctttgcagctcagtt 27714070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 94 - 193
Target Start/End: Original strand, 31291166 - 31291264
Alignment:
Q  94 gtaacatgttagaattttttgttttctgcataatggtttgtatgacaatttcaagaatggatcctctcatgttgaaataaacatgaggatgttatgtttc 193  Q
    |||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||| ||||  | ||||||||||    
T  31291166 gtaacatgttagaatttt-tgttttctgcataatggtgtgtattacaatttcaagagtggatcctctcatgttgaaataaaaatgactaagttatgtttc 31291264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 202 - 377
Target Start/End: Complemental strand, 27702484 - 27702303
Alignment:
Q  202 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcga 296  Q
    ||||||||| | ||| |||||||||| |||| |||||| |||  ||||||||||||||||||| |  ||||||     |||||| |||||||||||||||    
T  27702484 gcaacttttctctaaccaaaactaagtattttcttgttttttgactgtacattgtcaggaaacgacatgtagtcatctggctatttgcattgtcatgcga 27702385  T
Q  297 catgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagtt 377  Q
    || |||||||| || ||  || ||||||||| |||||||||| |||||  |||||||||||| ||||||||| |||||||||    
T  27702384 caagtctagaggttgcttacagcacagaatccgttggttgttcgaaaggacagtgagtaatgatatgctttgcagctcagtt 27702303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 286 - 398
Target Start/End: Original strand, 31289405 - 31289518
Alignment:
Q  286 ttgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagttatactgg 384  Q
    |||||||||||||||||||| | || |||||| ||||||||| |||||||||| ||||| ||||||||||||||||||||||| || ||| |||||||||    
T  31289405 ttgtcatgcgacatgtctagtggttgctcgcagcacagaatccgttggttgttcgaaagggcagtgagtaatgctatgctttgcagatcaattatactgg 31289504  T
Q  385 tttcagaattttga 398  Q
    || |||| ||||||    
T  31289505 ttacagagttttga 31289518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 445 - 545
Target Start/End: Original strand, 26632565 - 26632665
Alignment:
Q  445 cataatggtggaaaatttacagctgaagcaacctgtatcagatgttgttaaatggttgccagagagtgcaacaggttttcggtgaaaggatgttatcaag 544  Q
    ||||||||||||||||||||  |||||||||||||||||| | |||||||||||||| || ||||| | ||||| || ||||||||||||||||||||||    
T  26632565 cataatggtggaaaatttactcctgaagcaacctgtatcaaaggttgttaaatggtttccggagagggaaacagattctcggtgaaaggatgttatcaag 26632664  T
Q  545 a 545  Q
    |    
T  26632665 a 26632665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 445 - 545
Target Start/End: Original strand, 26738541 - 26738641
Alignment:
Q  445 cataatggtggaaaatttacagctgaagcaacctgtatcagatgttgttaaatggttgccagagagtgcaacaggttttcggtgaaaggatgttatcaag 544  Q
    ||||||||||||||||||||  |||||||||||||||||| | |||||||||||||| || ||||| | ||||| || ||||||||||||||||||||||    
T  26738541 cataatggtggaaaatttactcctgaagcaacctgtatcaaaggttgttaaatggtttccggagagggaaacagattctcggtgaaaggatgttatcaag 26738640  T
Q  545 a 545  Q
    |    
T  26738641 a 26738641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 27652598 - 27652530
Alignment:
Q  112 ttgttttctgcataatggtttgtatgacaatttcaagaatggatcctctcatgttgaaataaacatgag 180  Q
    |||||||||||||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  27652598 ttgttttctgcatagtggtgtgtatgaaaatttcaagagtggatcctctcatgttgaaataaacatgag 27652530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 26966007 - 26966092
Alignment:
Q  80 ttcttattttgaccgtaacatgttagaattttttgttttctgcataatggtttgtatgacaatttcaagaatggatcctctcatgt 165  Q
    |||| ||||||| ||||||||||||  ||||||||||||||||||||| ||||||||||||||||||| | |||||  ||||||||    
T  26966007 ttctcattttgagcgtaacatgttatgattttttgttttctgcataatcgtttgtatgacaatttcaaaagtggattttctcatgt 26966092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 203 - 377
Target Start/End: Original strand, 26890066 - 26890246
Alignment:
Q  203 caacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcgac 297  Q
    |||||||| | ||| ||||||||| |||||| || || |||  ||||||||||||||||||| |||||||||     |||||| |  | ||||||| ||     
T  26890066 caacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggag 26890165  T
Q  298 atgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagtt 377  Q
    |||||||||| ||  ||||||||||||||| || |||||||  |||| ||||||||||| | ||||||||| |||||||||    
T  26890166 atgtctagaggttgttcgcaccacagaatccgtcggttgttctaaagggcagtgagtaacggtatgctttgcagctcagtt 26890246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 26640690 - 26640747
Alignment:
Q  218 caaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagtg 275  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  26640690 caaaactaagcatttactagttctttgactgtacattgtcaggaaaccatctgtagtg 26640747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 26746656 - 26746713
Alignment:
Q  218 caaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagtg 275  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  26746656 caaaactaagcatttactagttctttgactgtacattgtcaggaaaccatctgtagtg 26746713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 202 - 364
Target Start/End: Original strand, 26628012 - 26628179
Alignment:
Q  202 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtag-----tggctatgtgcattgtcatgcga 296  Q
    ||||||||| | ||| |||||||||| ||||  |||||||||  |||||||||||||||||||||  | |||     ||||| | ||||||||||||| |    
T  26628012 gcaacttttctctaaccaaaactaagtatttttttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcattgtcatgcaa 26628111  T
Q  297 catgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgc 364  Q
     |||||||||| || || |||| ||| |||| ||||| |||| ||| | | ||||||||||| |||||    
T  26628112 gatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaatgggaagtgagtaatgatatgc 26628179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 202 - 364
Target Start/End: Original strand, 26733989 - 26734156
Alignment:
Q  202 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtag-----tggctatgtgcattgtcatgcga 296  Q
    ||||||||| | ||| |||||||||| ||||  |||||||||  |||||||||||||||||||||  | |||     ||||| | ||||||||||||| |    
T  26733989 gcaacttttctctaaccaaaactaagtatttttttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcattgtcatgcaa 26734088  T
Q  297 catgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgc 364  Q
     |||||||||| || || |||| ||| |||| ||||| |||| ||| | | ||||||||||| |||||    
T  26734089 gatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaatgggaagtgagtaatgatatgc 26734156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 218 - 355
Target Start/End: Original strand, 26828382 - 26828524
Alignment:
Q  218 caaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagtg-----gctatgtgcattgtcatgcgacatgtctagagatttc 312  Q
    ||||||||||||||| |||||| |||  ||||||||||||||||  ||||||||||||     |||||  |||||||||||||  |||||||| | || |    
T  26828382 caaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcgggatgtctagtggttgc 26828481  T
Q  313 tcgcaccacagaatctgttggttgtttgaaagtgcagtgagta 355  Q
    ||| |||||| |||| ||| |||| | ||||| ||| ||||||    
T  26828482 tcgtaccacaaaatccgtttgttgctcgaaagggcaatgagta 26828524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 250 - 358
Target Start/End: Complemental strand, 27652339 - 27652226
Alignment:
Q  250 acattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaag 344  Q
    |||||||||||||||||||| | ||     |||||| |||||||||||| || ||||||||| ||| ||||||||||| ||||  |||||||||  ||||    
T  27652339 acattgtcaggaaaccatctatggtcatctggctatttgcattgtcatgtgatatgtctagacattgctcgcaccacaaaatccattggttgttccaaag 27652240  T
Q  345 tgcagtgagtaatg 358  Q
     ||||||| |||||    
T  27652239 ggcagtgactaatg 27652226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 368
Target Start/End: Original strand, 26853696 - 26853790
Alignment:
Q  274 tggctatgtgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg 368  Q
    ||||||| ||||||||||| | | || ||||| | || | | ||||||| |||||||||| |||| ||||| ||||||||||||| |||||||||    
T  26853696 tggctatttgcattgtcattcaagatatctaggggttgcgcacaccacaaaatctgttggctgttcgaaagggcagtgagtaatgatatgctttg 26853790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 368
Target Start/End: Complemental strand, 27586768 - 27586682
Alignment:
Q  282 tgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg 368  Q
    ||||||||||| ||| ||||||| || |  |||  |||||||||||||| | ||||||||||  ||||||||||||| |||||||||    
T  27586768 tgcattgtcatacgagatgtctataggtggctcaaaccacagaatctgtggcttgtttgaaatggcagtgagtaatgatatgctttg 27586682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 27652405 - 27652343
Alignment:
Q  202 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaac 264  Q
    ||||||||| | ||| ||||||||||||||||||||||| ||  || ||||||||||||||||    
T  27652405 gcaacttttctctaaccaaaactaagcatttacttgttcattgactttacattgtcaggaaac 27652343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 156; Significance: 2e-82; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 54 - 335
Target Start/End: Original strand, 64579 - 64863
Alignment:
Q  54 ttttaaaatgaatttcatttttcttcttcttattttgaccgtaacatgttagaattttttgttttctgcataatggtttgtatgacaatttcaagaatgg 153  Q
    ||||||| |||||||||||||  ||  ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  64579 ttttaaactgaatttcattttattt--tctcattttgaccgtaacatgtcagaattttttgttttctgcataatggtttgtatgacaatttcaagagtgg 64676  T
Q  154 atcctctcatgttgaaataaacatgaggatgttatgtttcaaattcgggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacat 253  Q
    || ||||| ||||||||||||||| | ||  |||||||| ||| || |||||||||| | |||  ||||||||||||||||||||||||| |||||||||    
T  64677 attctctcttgttgaaataaacataaagaaattatgtttgaaactcaggcaacttttctctaacgaaaactaagcatttacttgttctttgtctgtacat 64776  T
Q  254 tgtcaggaaaccatctgtag-----tggctatgtgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggtt 335  Q
    ||||||||||||||||||||     ||||||| ||||||||||||||||||||||||||||| |||||| || |||||| |||||||    
T  64777 tgtcaggaaaccatctgtagtcatctggctatttgcattgtcatgcgacatgtctagagattgctcgcagcatagaatccgttggtt 64863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 448 - 651
Target Start/End: Original strand, 65889 - 66091
Alignment:
Q  448 aatggtggaaaatttacagctgaagcaacctgtatcagatgttgttaaatggttgccagagagtgcaacaggttttcggtgaaaggatgttatcaagatc 547  Q
    |||||||||||||||| ||||| || |||||||||||||| ||||||||| |||||| |||||| || ||| || || | |||||||||||||||||| |    
T  65889 aatggtggaaaatttatagctgcaggaacctgtatcagattttgttaaattgttgccggagagtacagcagattctcagagaaaggatgttatcaagagc 65988  T
Q  548 tgtgaaatttgcgttttcgcaaagatttcaacaatgaattattgaaggcactgcagagattatggctcacattagtgccaaaaaatattgtgtttggttg 647  Q
    |||||||||||||||||  ||| |||||| || ||||||||||||||||| |||| |||||||||||||||| ||||| ||||||  |||||| ||||||    
T  65989 tgtgaaatttgcgtttt-tcaatgatttcgacgatgaattattgaaggcagtgcatagattatggctcacatcagtgctaaaaaaagttgtgtatggttg 66087  T
Q  648 gaga 651  Q
    ||||    
T  66088 gaga 66091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 8e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 18692710 - 18692628
Alignment:
Q  111 tttgttttctgcataatggtttgtatgacaatttcaagaatggatcctctcatgttgaaataaacatgaggatgttatgtttc 193  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  18692710 tttgttttctgcataatggtgtgtatgacaatttcaagagtggatcctctcatgttgaaataaacatgaggacgttatgtttc 18692628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 220 - 383
Target Start/End: Original strand, 5083105 - 5083274
Alignment:
Q  220 aaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcgacatgtctagagatttctc 314  Q
    |||||||||||| | || ||||||  |||||||||| ||| ||||||||||||||     |||| | ||||||||||| ||| |||||||||| |  |||    
T  5083105 aaactaagcattcatttcttcttttactgtacattgacagaaaaccatctgtagttgtctggctttttgcattgtcatacgagatgtctagaggtggctc 5083204  T
Q  315 gcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagttatactg 383  Q
       |||||||||| || | ||||||||||| ||||||||||||| ||||||||| ||||||||| |||||    
T  5083205 aatccacagaatccgtggattgtttgaaagggcagtgagtaatgatatgctttgcagctcagttgtactg 5083274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 18674597 - 18674557
Alignment:
Q  153 gatcctctcatgttgaaataaacatgaggatgttatgtttc 193  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  18674597 gatcctctcatgttgaaataaacatgaggacgttatgtttc 18674557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 202 - 377
Target Start/End: Complemental strand, 29270144 - 29269963
Alignment:
Q  202 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtag-----tggctatgtgcattgtcatgcga 296  Q
    ||||||||| | ||| |||||||||| |||| ||||||||||  |||||||||||||||||||||  |||||     ||||||| |||||||||||||||    
T  29270144 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtcatgcga 29270045  T
Q  297 catgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagtt 377  Q
    || |||||||| || ||| || |||| |||| ||| |||||| ||||| ||||||||||||| ||||||||| |||||||||    
T  29270044 caagtctagaggttgctcacagcacataatccgtttgttgttcgaaagggcagtgagtaatgatatgctttgcagctcagtt 29269963  T

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Target: scaffold0349 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 202 - 377
Target Start/End: Original strand, 17693 - 17874
Alignment:
Q  202 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtag-----tggctatgtgcattgtcatgcga 296  Q
    ||||||||| | ||| |||||||||| |||| ||||||||||  |||||||||||||||||||||  |||||     ||||||| |||||||||||||||    
T  17693 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtcatgcga 17792  T
Q  297 catgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagtt 377  Q
    || |||||||| || ||  || | ||||||| |||||||||| ||||| |||| |||||||| ||||||||| |||||||||    
T  17793 caagtctagaggttgcttacagcgcagaatccgttggttgttcgaaagggcagcgagtaatgatatgctttgcagctcagtt 17874  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 482 - 587
Target Start/End: Complemental strand, 7144956 - 7144851
Alignment:
Q  482 tcagatgttgttaaatggttgccaga-gagtgcaacaggttttcggtgaaaggatgttatcaagatctgtgaaatttgcgttttcgcaaagatttcaaca 580  Q
    ||||||||||| ||||||||||| || ||||||||  |||| || || ||||||| |||||||||  |||| |||||  |||||| ||| |||||| |||    
T  7144956 tcagatgttgtaaaatggttgccggacgagtgcaatgggttctccgtaaaaggat-ttatcaagagatgtgcaatttatgttttcacaatgatttcgaca 7144858  T
Q  581 atgaatt 587  Q
    |||||||    
T  7144857 atgaatt 7144851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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