View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9696_2D_low_11 (Length: 359)
Name: NF9696_2D_low_11
Description: NF9696_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_2D_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 32326684 - 32326340
Alignment:
| Q |
1 |
ctcagatccacaatgtcttccgcaaactctgaaaactctgaaacccatgaaacctctgccatacccaccattgtctcaacaacagaaaacaagcttgttg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32326684 |
ctcagatccacaatgtcttccgcgaactctgaaaactctgaaacccatgaaacctctgtcatacccaccattgtctcaacaacagaaaacaaacttgttg |
32326585 |
T |
|
| Q |
101 |
ttctaaatgctggatctcagctttacatcaagttggatggcgacaactatccagcttggcacatccaatttttcgcccttctcacaggatttgacctgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32326584 |
ttctaaatgctggatctcagctttacatcaagttggatggcgacaactatccagcttggcgcatccaatttttcgcccttctcacaggatttgacctgat |
32326485 |
T |
|
| Q |
201 |
gggctatgtagatggcactaacttgtgtccatctaaaatgttggagaatgaaacctccaaaatcaaccctgcatacactcattgggtaagacaagaccaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32326484 |
aggctatgtagatggcactaacttgtgtccatctaaaatgttggagaatgaaacctccaaaatcaaccctgcatacactcattgggtaagacaagaccaa |
32326385 |
T |
|
| Q |
301 |
cttatccttcatggtgttgtatcgtcagtagctgcaactgatgtc |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32326384 |
cttatccttcatggtgttgtatcgtcagtagctgcaactgttgtc |
32326340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 18731720 - 18731376
Alignment:
| Q |
1 |
ctcagatccacaatgtcttccgcaaactctgaaaactctgaaacccatgaaacctctgccatacccaccattgtctcaacaacagaaaacaagcttgttg |
100 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18731720 |
ctcagatccacaatgtcttccgcgacctctgaaaactctgaaactcatgaaacctctgccatacccaccattgtctcaacaacagaaaacaaacttgttg |
18731621 |
T |
|
| Q |
101 |
ttctaaatgctggatctcagctttacatcaagttggatggcgacaactatccagcttggcacatccaatttttcgcccttctcacaggatttgacctgat |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18731620 |
ttctaaatgctggatctcagctttacatcaagctggatggcgacaactatccagcttggcacatccaatttttcgcccttctcacaggatttgacctgtt |
18731521 |
T |
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| Q |
201 |
gggctatgtagatggcactaacttgtgtccatctaaaatgttggagaatgaaacctccaaaatcaaccctgcatacactcattgggtaagacaagaccaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18731520 |
gggctatgtagatggcactaacttgtgtccatctaaaatgttggagaatgaaacctccaaaatcaaccctgcatacactcattgggtaagacaagaccaa |
18731421 |
T |
|
| Q |
301 |
cttatccttcatggtgttgtatcgtcagtagctgcaactgatgtc |
345 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18731420 |
cttatccttcatggtgttgtatcgtcagtagctgcaactgttgtc |
18731376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 31343823 - 31343885
Alignment:
| Q |
97 |
gttgttctaaatgctggatctcagctttacatcaagttggatggcgacaactatccagcttgg |
159 |
Q |
| |
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||||||||||||||||| || || ||||| || ||||||||||| || |||||||| |||||| |
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| T |
31343823 |
gttgttctaaatgctggctcacaactttatattaagttggatggagataactatcctgcttgg |
31343885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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