View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9696_2D_low_14 (Length: 314)
Name: NF9696_2D_low_14
Description: NF9696_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_2D_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 39850847 - 39850552
Alignment:
| Q |
18 |
aagagtgactcttaatattcctcatgattatcttctgagccattgtaaatattgtctttttcacaaaaagtggcaaacattgctagtcatgattatcttt |
117 |
Q |
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| T |
39850847 |
aagagtgacttttaatattcgtcatgattatcttctgagccatcgtaaatattatctttttcacgaaaagtggcaaacattgctagtcatgattatcttt |
39850748 |
T |
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| Q |
118 |
tagtctattccattttgtaaattacaattattcttgttctagatataaaatataagatcaaagggtagagttgaaactttaaaattgtgtnnnnnnnnnn |
217 |
Q |
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| T |
39850747 |
tagtctattccattttgtaaattacaattattcttgttctagatataaaatataagatcaaagggtagagttaaaactttaaaattgtgt-gggggtggg |
39850649 |
T |
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| Q |
218 |
nnatcaggtttggggtagatataagatcactaaaggcaactatgatgctaagaaaacttaaatataaagtggcctaaaaccatgttgaaacaatatc |
314 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| || || ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39850648 |
ggatcaggtttggggtagatataagatcactcaaggcaactatgatgcaaataatacttaaatataaagtggcccaaaaccatgttgaaacaatatc |
39850552 |
T |
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