View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9696_2D_low_16 (Length: 286)
Name: NF9696_2D_low_16
Description: NF9696_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_2D_low_16 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 11 - 272
Target Start/End: Complemental strand, 183548 - 183287
Alignment:
| Q |
11 |
gatggacatcaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
110 |
Q |
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| T |
183548 |
gatggacaacaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
183449 |
T |
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| Q |
111 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatac |
210 |
Q |
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| T |
183448 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatac |
183349 |
T |
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| Q |
211 |
tcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggt |
272 |
Q |
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| T |
183348 |
tcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggt |
183287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 493968 - 494229
Alignment:
| Q |
11 |
gatggacatcaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
110 |
Q |
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| T |
493968 |
gatggacaacaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
494067 |
T |
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| Q |
111 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatac |
210 |
Q |
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| T |
494068 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatac |
494167 |
T |
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| Q |
211 |
tcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggt |
272 |
Q |
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| T |
494168 |
tcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggt |
494229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 18191629 - 18191891
Alignment:
| Q |
11 |
gatggacatcaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
110 |
Q |
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| T |
18191629 |
gatggacaacaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
18191728 |
T |
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| Q |
111 |
ggtgccccctgttttttcagggtaagaagggg-tagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccata |
209 |
Q |
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| T |
18191729 |
ggtgccccctgttttttcagggtaagaagggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccata |
18191828 |
T |
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| Q |
210 |
ctcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggt |
272 |
Q |
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| T |
18191829 |
ctcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggt |
18191891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 34658967 - 34659228
Alignment:
| Q |
11 |
gatggacatcaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
110 |
Q |
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| T |
34658967 |
gatggacaacaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
34659066 |
T |
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| Q |
111 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatac |
210 |
Q |
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| T |
34659067 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaagattcgagtacgaggcgctccggcgctgaagtaattgatgccatac |
34659166 |
T |
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| Q |
211 |
tcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggt |
272 |
Q |
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| T |
34659167 |
tcccaagaaaagctcgaacgaccttaaacaaaatggtacctgtacccgaaaccgacacaggt |
34659228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 8174936 - 8174997
Alignment:
| Q |
91 |
ttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtagagaaaatg |
153 |
Q |
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| T |
8174936 |
ttatcggttcaagcacacaaggtg-cccttgtttttgtagggtaagaagggatagagaaaatg |
8174997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 46 - 272
Target Start/End: Original strand, 14404532 - 14404758
Alignment:
| Q |
46 |
tgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtag |
145 |
Q |
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| T |
14404532 |
tgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtag |
14404631 |
T |
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| Q |
146 |
agaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagg |
245 |
Q |
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| T |
14404632 |
agaaaatggctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagg |
14404731 |
T |
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| Q |
246 |
gtacctgtacccgaaaccgacacaggt |
272 |
Q |
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| T |
14404732 |
gtacctgtacccgaaaccgacacaggt |
14404758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 45610235 - 45610202
Alignment:
| Q |
20 |
caggtgaatattcctgtactacctcttgttggtc |
53 |
Q |
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| T |
45610235 |
caggtgaatattcctgtactacctcttgttggtc |
45610202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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