View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9696_2D_low_2 (Length: 495)
Name: NF9696_2D_low_2
Description: NF9696_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_2D_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 99 - 411
Target Start/End: Complemental strand, 10171478 - 10171168
Alignment:
| Q |
99 |
attccagcttgcacacctaaaaactcacaaaatagagattttgggttcaaatccgagtaatcacaaaatatattcagctcaacaattttgagattgtccg |
198 |
Q |
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| T |
10171478 |
attcaagcttgcacacctaaaaactca--aaatatcaattttgggttcgaatccaagtaatcacaaaatatatccaacttaacaattttgatattattcg |
10171381 |
T |
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| Q |
199 |
ttgagctatactttgcggacaatcgctactgttgttgtcgtgttttgtcttggttaatttcgtcaagaatcaacatcattgctacgatgaatgcatagtc |
298 |
Q |
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| T |
10171380 |
ttaagctatactttgcggacaattgctactgttgttgtcatgttttgtcttggttaatttcgtcaagaatcaacatcactgctacgatgaatgcatagtc |
10171281 |
T |
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| Q |
299 |
aacattgggatgcaccctaaccgtgagattatctttgccaaacgcagcactttgaacagtctgcttcttatgcatctacaatcaaataaaattgcatttg |
398 |
Q |
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| T |
10171280 |
aacattgggatgcaccctaaccgtgagattatctttgccaaacgcagcactttgaacagtctccttcttatgcatctacaatcaaataaaattgcatttg |
10171181 |
T |
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| Q |
399 |
caagattagaatt |
411 |
Q |
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| T |
10171180 |
caagattaaaatt |
10171168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10171604 - 10171555
Alignment:
| Q |
1 |
tagagatagtcggcacataaccaacttaattaaattcaactaactttctt |
50 |
Q |
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| T |
10171604 |
tagagatagttggcaaataaccaacttaattaaattcaactaactctctt |
10171555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 475
Target Start/End: Complemental strand, 10171135 - 10171100
Alignment:
| Q |
440 |
tatcttacattttaacggggttaaattttcacgtaa |
475 |
Q |
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| T |
10171135 |
tatcttacatttttacggggttaaattttcacgtaa |
10171100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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