View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9696_2D_low_9 (Length: 387)
Name: NF9696_2D_low_9
Description: NF9696_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_2D_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 129 - 326
Target Start/End: Complemental strand, 10408574 - 10408378
Alignment:
| Q |
129 |
ctaattaaagccattactcttccttctatacggcagatgtgtttgataaaaaatcatatatgttctctctcaaattttaagattttggcttatgtatgtt |
228 |
Q |
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| T |
10408574 |
ctaattaaagccattactcttccttctatacggcagatgtgtttgataaaaaatcatatatgttctctctcaaattttaagattttggcttatgtatgtt |
10408475 |
T |
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| Q |
229 |
gcatccaatatgtagacgtgtcggtctcttgagttggtaaattttcgtgtaagtctagcatccatccaatatagatcaaaactagatggtaaattttt |
326 |
Q |
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| T |
10408474 |
gcatccaatatgtagacgtgtcggtctcttgagttggtaaattttcgtgtaagtctcacat-catccaatatagatcaaaactagatggtaaattttt |
10408378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 10408693 - 10408601
Alignment:
| Q |
19 |
gaatagtgatg-attttttgtgtgcaaattccattcgagaaacatcatcatagttttccaacctgactttaaatgtgtacgggtcatctaatt |
110 |
Q |
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| T |
10408693 |
gaatagtgatgcattttttgtgtgcaaattccattcgagaaacatcatcatagttttccaacctgactttaaatgtgtacgggtcatctaatt |
10408601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 10408196 - 10408141
Alignment:
| Q |
321 |
atttttgagttggtcgatttctacgttgcaagatgcattcgtacatcaaggacatt |
376 |
Q |
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| T |
10408196 |
atttttgagttggtcgatttctacgttgcaagatgcattcgtacatcaaagacatt |
10408141 |
T |
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