View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9696_high_2 (Length: 422)
Name: NF9696_high_2
Description: NF9696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 223 - 412
Target Start/End: Original strand, 39681491 - 39681676
Alignment:
| Q |
223 |
tctattagtattgtagttagttgattgagtcagaagtgagtttacttgtgtgaaactaaaacaagtgcaatattctgcaattctttgatacactctttct |
322 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39681491 |
tctattagtattgtagttagttga----gtcagaagtgagtttacttgtatgaaactaaaacaagtgcaatattctacaattctttgatacactctttct |
39681586 |
T |
|
| Q |
323 |
tttgttttgctgagtgtgagttcaccattttgttctctaacaacttatatgttcaacacaacagttcaagaagaagagaaattacctatg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39681587 |
tttgttttgctgagtgtgagttcaccattttgttctctaacaacttatatgttcaacacaacagttcaagaagaagagaaattacctatg |
39681676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University