View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9696_low_1 (Length: 467)

Name: NF9696_low_1
Description: NF9696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9696_low_1
NF9696_low_1
[»] chr4 (21 HSPs)
chr4 (9-462)||(8363265-8363718)
chr4 (12-210)||(8369839-8370037)
chr4 (219-462)||(26495119-26495362)
chr4 (219-462)||(36244643-36244886)
chr4 (220-462)||(56156933-56157175)
chr4 (222-326)||(36243519-36243623)
chr4 (219-408)||(52137423-52137612)
chr4 (219-326)||(56157508-56157615)
chr4 (219-326)||(26496321-26496428)
chr4 (219-326)||(20625516-20625623)
chr4 (220-326)||(20620137-20620243)
chr4 (291-432)||(44499890-44500031)
chr4 (220-326)||(52138807-52138912)
chr4 (223-402)||(36846496-36846674)
chr4 (121-199)||(2475053-2475131)
chr4 (219-341)||(26631216-26631338)
chr4 (220-373)||(35348795-35348948)
chr4 (220-325)||(39056423-39056528)
chr4 (90-174)||(11132715-11132799)
chr4 (220-327)||(40723225-40723333)
chr4 (351-399)||(41348365-41348413)
[»] chr3 (11 HSPs)
chr3 (219-462)||(49380830-49381073)
chr3 (220-462)||(13621834-13622076)
chr3 (219-326)||(13620917-13621024)
chr3 (257-432)||(14744098-14744273)
chr3 (219-318)||(49379698-49379797)
chr3 (116-174)||(7165367-7165425)
chr3 (220-326)||(37416450-37416556)
chr3 (145-174)||(1101573-1101602)
chr3 (125-202)||(35845490-35845567)
chr3 (146-174)||(3352739-3352767)
chr3 (123-199)||(20106040-20106115)
[»] scaffold0114 (1 HSPs)
scaffold0114 (220-462)||(38538-38780)
[»] chr7 (16 HSPs)
chr7 (220-462)||(41329346-41329588)
chr7 (238-432)||(35296724-35296918)
chr7 (220-406)||(32653461-32653647)
chr7 (219-312)||(41328216-41328309)
chr7 (219-326)||(39981314-39981421)
chr7 (30-140)||(21690616-21690726)
chr7 (219-343)||(666723-666847)
chr7 (221-277)||(32653728-32653784)
chr7 (223-343)||(43442758-43442878)
chr7 (219-326)||(669400-669507)
chr7 (293-326)||(2414816-2414849)
chr7 (120-174)||(28645071-28645125)
chr7 (147-183)||(21690546-21690582)
chr7 (146-174)||(33536845-33536873)
chr7 (291-343)||(44376683-44376735)
chr7 (291-343)||(44385550-44385602)
[»] chr2 (14 HSPs)
chr2 (219-462)||(28610019-28610262)
chr2 (220-432)||(4919825-4920037)
chr2 (219-326)||(28611264-28611371)
chr2 (219-315)||(4921081-4921177)
chr2 (261-408)||(45699568-45699715)
chr2 (223-334)||(8321247-8321358)
chr2 (236-324)||(19397544-19397632)
chr2 (222-324)||(19398814-19398916)
chr2 (245-299)||(45699523-45699577)
chr2 (290-334)||(8320821-8320865)
chr2 (139-199)||(41374314-41374374)
chr2 (219-272)||(8320779-8320832)
chr2 (219-303)||(2276278-2276362)
chr2 (219-303)||(34147133-34147217)
[»] chr1 (14 HSPs)
chr1 (219-452)||(14479401-14479634)
chr1 (219-451)||(28051495-28051726)
chr1 (221-407)||(51446774-51446960)
chr1 (219-326)||(28050318-28050425)
chr1 (219-326)||(51445587-51445694)
chr1 (220-326)||(14478264-14478370)
chr1 (236-342)||(40533600-40533706)
chr1 (219-343)||(12667270-12667394)
chr1 (236-322)||(40634707-40634793)
chr1 (220-343)||(48528892-48529015)
chr1 (117-179)||(41068918-41068980)
chr1 (219-304)||(48527531-48527616)
chr1 (223-326)||(7306267-7306370)
chr1 (219-326)||(12665788-12665895)
[»] chr5 (13 HSPs)
chr5 (219-462)||(11796566-11796808)
chr5 (219-326)||(11797545-11797652)
chr5 (220-326)||(23325910-23326016)
chr5 (219-326)||(23333979-23334086)
chr5 (219-326)||(10735760-10735867)
chr5 (223-342)||(10736934-10737053)
chr5 (220-326)||(41144530-41144636)
chr5 (98-174)||(41405437-41405513)
chr5 (256-326)||(13520794-13520864)
chr5 (290-343)||(13519540-13519593)
chr5 (308-399)||(9219262-9219353)
chr5 (219-272)||(35081503-35081556)
chr5 (98-174)||(18615308-18615384)
[»] scaffold0219 (2 HSPs)
scaffold0219 (219-402)||(6892-7074)
scaffold0219 (219-334)||(8194-8309)
[»] chr6 (5 HSPs)
chr6 (220-326)||(11722784-11722890)
chr6 (252-326)||(21777496-21777570)
chr6 (98-173)||(31794422-31794497)
chr6 (221-331)||(11968484-11968594)
chr6 (146-199)||(12261976-12262029)
[»] chr8 (11 HSPs)
chr8 (219-408)||(9853564-9853753)
chr8 (219-326)||(9854891-9854998)
chr8 (240-326)||(42793717-42793803)
chr8 (236-342)||(38697170-38697276)
chr8 (219-326)||(38697865-38697972)
chr8 (46-111)||(24910263-24910328)
chr8 (220-325)||(28291293-28291398)
chr8 (220-341)||(31844366-31844487)
chr8 (291-432)||(24191446-24191587)
chr8 (220-303)||(28291400-28291483)
chr8 (146-174)||(8826918-8826946)
[»] scaffold1609 (1 HSPs)
scaffold1609 (113-174)||(301-362)
[»] scaffold0011 (1 HSPs)
scaffold0011 (219-304)||(128625-128710)


Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 9 - 462
Target Start/End: Complemental strand, 8363718 - 8363265
Alignment:
Q  9 ggatacaacttatcaattcccttctataaaatatatattttattttctatgtgaaacaccagtaaatatttgttccccactcgttgcatattttatgtgc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8363718 ggatacaacttatcaattcccttctataaaatatatattttattttctatgtgaaacaccggtaaatatttgttccccactcgttgcatattttatgtgc 8363619  T
Q  109 ttaaatatgcggaagaaaatttttatgaaccaataaaagaaagtcaatatgataaaattttgaaaagtaatgattgatttgaaaatatcaatatcaatat 208  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8363618 ttaaatatgcggaagaaaatttttatgaaccaatagaagaaagtcaatatgataaaattttgaaaagtaatgattgatttgaaaatatcaatatcaatat 8363519  T
Q  209 aannnnnnnnaggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggt 308  Q
    ||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8363518 aattttttttaggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccctttggt 8363419  T
Q  309 tttgctccgttagtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctata 408  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8363418 tttgctccgttagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctata 8363319  T
Q  409 atgagccatcggtacctaatttttccagcactatcatcttctctttgcttctcc 462  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  8363318 atgagccatcggtacctaatttttccagcactatcatcttctctcttcttctcc 8363265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 8370037 - 8369839
Alignment:
Q  12 tacaacttatcaattcccttctataaaatatatattttattttctatgtgaaacaccagtaaatatttgttccccactcgttgcatattttatgtgctta 111  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||| ||||||||||||||    
T  8370037 tacaacttatcaattcccttctttaaaatatatattttattttccatgtgaaacaccgttaaatatttgttccccactcgttgcagattttatgtgctta 8369938  T
Q  112 aatatgcggaagaaaatttttatgaaccaataaaagaaagtcaatatgataaaattttgaaaagtaatgattgatttgaaaatatcaatatcaatataa 210  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8369937 aatatgcggaagaatatttttatgaaccaatagaagaaagtcaatatgataaaattctgaaaagtaatgattgatttgaaaatatcaatatcaatataa 8369839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 219 - 462
Target Start/End: Original strand, 26495119 - 26495362
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  26495119 aggcttaattgaatatttggtcccctaaataattatgagtttacattttgctcctataaattgtaaaactcacattttggtccccttggttttgctccgt 26495218  T
Q  319 tagtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctataatgagccatc 418  Q
     ||||||||||||||||||||||||       |||||||||||||||||||||||||| | ||||||||||||||||  ||||||||||| |||||||||    
T  26495219 cagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagccgtttgattgcatgtctgttatacctatagtgagccatc 26495318  T
Q  419 ggtacctaatttttccagcactatcatcttctctttgcttctcc 462  Q
    || ||||||||||||||||||||||||||||||| | |||||||    
T  26495319 ggcacctaatttttccagcactatcatcttctctcttcttctcc 26495362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 219 - 462
Target Start/End: Complemental strand, 36244886 - 36244643
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||||| ||| |||||||||||    
T  36244886 aggcttaattggatatttggtccccaaaataattatgagtttacattttgatcccataaattgtaaaactcacatttttgtccccttgattttgctccgt 36244787  T
Q  319 tagtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctataatgagccatc 418  Q
     ||||||||||||||||||||||||       ||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| | |||| ||    
T  36244786 cagtcaaattgatcccctccgttagttttttaatgtttaaaatgtttgatatgatattagccgtttgattgcatgtccattatacctatagtcagccgtc 36244687  T
Q  419 ggtacctaatttttccagcactatcatcttctctttgcttctcc 462  Q
    || |||||||||||||||| |||||||||||||| | |||||||    
T  36244686 ggcacctaatttttccagctctatcatcttctctcttcttctcc 36244643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 220 - 462
Target Start/End: Original strand, 56156933 - 56157175
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtt 319  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||||||||||     
T  56156933 ggcttaattggatatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtctccttggttttgctccgtc 56157032  T
Q  320 agtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctataatgagccatcg 419  Q
    | ||||||||| ||||||||||||       |||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| |||||| |||    
T  56157033 aatcaaattgaccccctccgttagttttttaatgtttaaaatttttgatatgatattagccgtttggttgcatgtccattatacctatagtgagccgtcg 56157132  T
Q  420 gtacctaatttttccagcactatcatcttctctttgcttctcc 462  Q
      ||||| |||||||||| |||| ||||||||| | |||||||    
T  56157133 acacctagtttttccagcgctattatcttctctcttcttctcc 56157175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 222 - 326
Target Start/End: Original strand, 36243519 - 36243623
Alignment:
Q  222 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgttag 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||| |||||    
T  36243519 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccccttagttttgctctgttag 36243618  T
Q  322 tcaaa 326  Q
    |||||    
T  36243619 tcaaa 36243623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 219 - 408
Target Start/End: Original strand, 52137423 - 52137612
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||  ||||||||||||  |||||||| ||||||    
T  52137423 aggcttaattggatatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttggtcctcttggttttactccgt 52137522  T
Q  319 tagtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctata 408  Q
      |||||||| |||  |||||||||       |||| |||| ||||||||||||| ||   |||||||||||||||||||||||| ||||    
T  52137523 cggtcaaattcatcatctccgttagtttttcaatgtctaaattttttgatatgattttaaccgtttgattgcatgtccattatacttata 52137612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 219 - 326
Target Start/End: Complemental strand, 56157615 - 56157508
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    ||||||||||||| ||||||||| ||||||||||||| ||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||| |    
T  56157615 aggcttaattggatatttggtcctctaaataattatgcgtttacattttggtttcataaattgtaaaactcacattttggtccctttggttttgctccat 56157516  T
Q  319 tagtcaaa 326  Q
    ||||||||    
T  56157515 tagtcaaa 56157508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 219 - 326
Target Start/End: Complemental strand, 26496428 - 26496321
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    ||||||||||||||||||||||| |||| |||||||| |||||||||||||||| ||| ||||||||||||||||||||||||  || | ||||||||||    
T  26496428 aggcttaattggacatttggtcctctaactaattatgtgtttacattttggtcccataaattgtaaaactcacattttggtcctcttaggtttgctccgt 26496329  T
Q  319 tagtcaaa 326  Q
     |||||||    
T  26496328 cagtcaaa 26496321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 326
Target Start/End: Complemental strand, 20625623 - 20625516
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||  |||||||||| ||| ||  ||||  ||||||||| |||||    
T  20625623 aggcttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaacttacagttgagtcctcttggttttggtccgt 20625524  T
Q  319 tagtcaaa 326  Q
     |||||||    
T  20625523 cagtcaaa 20625516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 20620137 - 20620243
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtt 319  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||  |||||||||||||| ||  ||||  ||||||||| |||||     
T  20620137 ggcttaattggacctttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcacagttgagtcctcttggttttggtccgtc 20620236  T
Q  320 agtcaaa 326  Q
    |||||||    
T  20620237 agtcaaa 20620243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 432
Target Start/End: Complemental strand, 44500031 - 44499890
Alignment:
Q  291 cattttggtccctttggttttgctccgttagtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgc 390  Q
    ||||||||||||||   |||||||||||||||||||||||||| |||||||||       |||| || | |||||||| |||| ||   |||||||||||    
T  44500031 cattttggtcccttaacttttgctccgttagtcaaattgatccactccgttagtttgttaatgtctatattttttgatttgattttaaccgtttgattgc 44499932  T
Q  391 atgtccattatacctataatgagccatcggtacctaattttt 432  Q
    ||||||||| || ||||| ||| || || | |||||||||||    
T  44499931 atgtccattgtatctatagtgaaccgtcagcacctaattttt 44499890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 52138912 - 52138807
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtt 319  Q
    ||||||||| |||||||| ||| ||||||||||||| ||||| |||||| ||  ||| ||||||| || | |||||||||||  ||||||||||||||||    
T  52138912 ggcttaattcgacatttgatcctctaaataattatgcgtttatattttgatcacataaattgtaagac-cccattttggtcctcttggttttgctccgtt 52138814  T
Q  320 agtcaaa 326  Q
     ||||||    
T  52138813 ggtcaaa 52138807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 402
Target Start/End: Complemental strand, 36846674 - 36846496
Alignment:
Q  223 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgttagt 322  Q
    |||||||||| ||||| ||||||| |||||    |||| ||||||||||| |||  | ||||||   |||||||||||||| | ||||||||||||| ||    
T  36846674 ttaattggacttttggccccctaagtaatttgttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttcgt 36846575  T
Q  323 caaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattata 402  Q
    ||| ||| |||| ||||||||       |||| |||| |||||||| |||| ||   | |||||||||||||||||||||    
T  36846574 caatttggtcccttccgttag-tttttaatgtctaaattttttgatttgattttaaccatttgattgcatgtccattata 36846496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 2475053 - 2475131
Alignment:
Q  121 aagaaaatttttatgaaccaataaaagaaagtcaatatgataaaattttgaaaagtaatgattgatttgaaaatatcaa 199  Q
    ||||||||| ||||  |||||||| ||||||||||| ||||||||||||||||| | |||| |  ||| ||||||||||    
T  2475053 aagaaaattattatctaccaataagagaaagtcaatgtgataaaattttgaaaactcatgaatatttttaaaatatcaa 2475131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 341
Target Start/End: Complemental strand, 26631338 - 26631216
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    |||||||||||||| |||||||||| || |||||     ||| ||||||||||  |||  | ||||||   |||||||||| ||| | ||||||||||||    
T  26631338 aggcttaattggacttttggtcccccaagtaatttgttattttcattttggtctcataactcgtaaaatcaacattttggttcctcttgttttgctccgt 26631239  T
Q  319 tagtcaaattgatcccctccgtt 341  Q
    ||||||| ||| |||||||||||    
T  26631238 tagtcaatttggtcccctccgtt 26631216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 373
Target Start/End: Original strand, 35348795 - 35348948
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtt 319  Q
    ||||||||||||| ||||||||| ||| |||||    |||| ||||||||||| |||  ||||||||   || |||| |||||| | |||||||| |||     
T  35348795 ggcttaattggacttttggtcccttaagtaatttgttgttttcattttggtcccataacttgtaaaatcaacgttttagtccctcttgttttgcttcgtc 35348894  T
Q  320 agtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgat 373  Q
    |||||| ||  |||||||||||||       |||| ||||||||||||| ||||    
T  35348895 agtcaatttagtcccctccgttagctttttaatgtctaaaatttttgatttgat 35348948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 325
Target Start/End: Original strand, 39056423 - 39056528
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtt 319  Q
    ||||||||||||| ||||||||| ||| |||||    |||| ||||||||||  |||  ||||||||   || |||| |||||| | |||||||||||||    
T  39056423 ggcttaattggacttttggtcccttaagtaatttgttgttttcattttggtctcataatttgtaaaatcaacgttttagtccctcttgttttgctccgtt 39056522  T
Q  320 agtcaa 325  Q
    ||||||    
T  39056523 agtcaa 39056528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 11132799 - 11132715
Alignment:
Q  90 cgttgcatattttatgtgcttaaatatgcggaagaaaatttttatgaaccaataaaagaaagtcaatatgataaaattttgaaaa 174  Q
    ||||||| |||||||||||||| ||||||  ||  || |||||||| ||| |||  | ||| ||||||| |||||||||||||||    
T  11132799 cgttgcaaattttatgtgcttatatatgcataaataattttttatgtacctatatgaaaaaatcaatattataaaattttgaaaa 11132715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 327
Target Start/End: Original strand, 40723225 - 40723333
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatg-agtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    |||||||| || ||||||||||||||| ||||| || | ||| ||||||||||| |||  |  |||||||||  |||||||||||| |||||  ||||||    
T  40723225 ggcttaataggtcatttggtcccctaattaattttgcaattttcattttggtcccataactaataaaactcatgttttggtcccttaggtttatctccgt 40723324  T
Q  319 tagtcaaat 327  Q
      |||||||    
T  40723325 cggtcaaat 40723333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 41348365 - 41348413
Alignment:
Q  351 atgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccatt 399  Q
    |||| |||||||||||||||||| ||  || ||||||||||||||||||    
T  41348365 atgtataaaatttttgatatgattttaatcatttgattgcatgtccatt 41348413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 219 - 462
Target Start/End: Complemental strand, 49381073 - 49380830
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || |||||||||||||||    
T  49381073 aggcttaattggatatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcatattttggtacccttggttttgctccgt 49380974  T
Q  319 tagtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctataatgagccatc 418  Q
     ||||||||||||||||||||||||       |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||    
T  49380973 cagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagccgtttgattgcatgtccattatacctatagtgagctatc 49380874  T
Q  419 ggtacctaatttttccagcactatcatcttctctttgcttctcc 462  Q
    || ||||||||||||||||||||||||||||||| | |||||||    
T  49380873 ggcacctaatttttccagcactatcatcttctctcttcttctcc 49380830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 220 - 462
Target Start/End: Complemental strand, 13622076 - 13621834
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| |||     
T  13622076 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccccttgattttgcttcgtc 13621977  T
Q  320 agtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctataatgagccatcg 419  Q
    |||||||||||||||||| |||||       || ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||    
T  13621976 agtcaaattgatcccctcagttagttttttaatatttaaaatttttgatatgatattagccgtttgattgcatgtccattatacctatagtgagccatcg 13621877  T
Q  420 gtacctaatttttccagcactatcatcttctctttgcttctcc 462  Q
    | ||||||||||||||||||||||||||||||| | |||||||    
T  13621876 gcacctaatttttccagcactatcatcttctctcttcttctcc 13621834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 219 - 326
Target Start/End: Original strand, 13620917 - 13621024
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    |||||||||| |||||||||||| ||||||||||||| |||||||||||||||  ||| ||||||||||||||||||||||||  |||||||||||||||    
T  13620917 aggcttaatttgacatttggtcctctaaataattatgcgtttacattttggtctcataaattgtaaaactcacattttggtcctcttggttttgctccgt 13621016  T
Q  319 tagtcaaa 326  Q
     |||||||    
T  13621017 cagtcaaa 13621024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 257 - 432
Target Start/End: Original strand, 14744098 - 14744273
Alignment:
Q  257 gtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgttagtcaaattgatcccctccgttagnnnnnnnatgttt 356  Q
    |||||||||||||||  ||| ||||||||||||||||||||||  | |||||||||||||||||||||||||||||  ||||||||        |||| |    
T  14744098 gtttacattttggtctcataaattgtaaaactcacattttggtttcattggttttgctccgttagtcaaattgatcatctccgttaattttttaatgtct 14744197  T
Q  357 aaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctataatgagccatcggtacctaattttt 432  Q
    ||| ||||||||||||| ||   || ||||||||||||||||||||| |||| ||| ||||| | |||||||||||    
T  14744198 aaattttttgatatgattttaaccgattgattgcatgtccattatacatatagtgaaccatcagcacctaattttt 14744273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 49379698 - 49379797
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| ||| ||||||||||||||||||| || |  |||||||||||||||    
T  49379698 aggcttaattggacatttggtcctctaaataattatgcgtttatattttggtcccataaattgtaaaactcacattttagttctcttggttttgctccgt 49379797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 7165425 - 7165367
Alignment:
Q  116 tgcggaagaaaatttttatgaaccaataaaagaaagtcaatatgataaaattttgaaaa 174  Q
    |||||||||||||||| ||| ||| |||  |||||||| ||||||||||||||| ||||    
T  7165425 tgcggaagaaaattttcatgtaccgatatgagaaagtcgatatgataaaattttcaaaa 7165367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 37416556 - 37416450
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtt 319  Q
    ||||||||||| | ||||||||||||| |||||    |||| ||||||||| | |||  |  |||||   |||||||||||||| | |||||||||||||    
T  37416556 ggcttaattggccttttggtcccctaagtaatttgttgttttcattttggttccataactcataaaatcaacattttggtccctcttgttttgctccgtt 37416457  T
Q  320 agtcaaa 326  Q
    |||||||    
T  37416456 agtcaaa 37416450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 174
Target Start/End: Original strand, 1101573 - 1101602
Alignment:
Q  145 aagaaagtcaatatgataaaattttgaaaa 174  Q
    ||||||||||||||||||||||||||||||    
T  1101573 aagaaagtcaatatgataaaattttgaaaa 1101602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 35845490 - 35845567
Alignment:
Q  125 aaatttttatgaaccaataaaagaaagtcaatatgataaaattttgaaaagtaatgattgatttgaaaatatcaatat 202  Q
    ||||||||||| ||  ||| ||||||||| ||||||||||||||| |||| | | ||||  ||| |||||||||||||    
T  35845490 aaatttttatgtactgatataagaaagtcgatatgataaaattttaaaaatttacgattattttcaaaatatcaatat 35845567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 174
Target Start/End: Complemental strand, 3352767 - 3352739
Alignment:
Q  146 agaaagtcaatatgataaaattttgaaaa 174  Q
    |||||||||||||||||||||||||||||    
T  3352767 agaaagtcaatatgataaaattttgaaaa 3352739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 20106115 - 20106040
Alignment:
Q  123 gaaaatttttatgaaccaataaaagaaagtcaatatgataaaattttgaaaagtaatgattgatttgaaaatatcaa 199  Q
    |||| |||||||| ||| |||  |||||||| |||||||||||||||||||| | |||| | |||| ||||||||||    
T  20106115 gaaattttttatgtaccgatattagaaagtcgatatgataaaattttgaaaacttatgact-atttcaaaatatcaa 20106040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 220 - 462
Target Start/End: Original strand, 38538 - 38780
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtt 319  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||| |||||||| ||||||     
T  38538 ggcttaattggacatttggtcccctaaataattatgagtttccattttggtcccataaattgtaaaactcacattttggtccccttggttttcctccgtc 38637  T
Q  320 agtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctataatgagccatcg 419  Q
    ||||||||||||||||||||||||       ||| ||||||||||| |||||||||| | ||||||||||||||||||||||||||||| |||||| |||    
T  38638 agtcaaattgatcccctccgttagttttttaatgattaaaattttttatatgatattagccgtttgattgcatgtccattatacctatagtgagccgtcg 38737  T
Q  420 gtacctaatttttccagcactatcatcttctctttgcttctcc 462  Q
    | ||||||||||||||||||||||||||||||| | |||||||    
T  38738 gcacctaatttttccagcactatcatcttctctcttcttctcc 38780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 162; Significance: 3e-86; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 220 - 462
Target Start/End: Complemental strand, 41329588 - 41329346
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| ||||||     
T  41329588 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccccttgattttactccgtc 41329489  T
Q  320 agtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctataatgagccatcg 419  Q
    ||||||||||||||||||||||||       ||||||||| |||||||| |||||||   ||||||||||||||||||||||||||||| ||||||||||    
T  41329488 agtcaaattgatcccctccgttagatttttaatgtttaaattttttgatgtgatattaaccgtttgattgcatgtccattatacctatagtgagccatcg 41329389  T
Q  420 gtacctaatttttccagcactatcatcttctctttgcttctcc 462  Q
    | ||||||||||| ||||||||||||||||||| | |||||||    
T  41329388 gcacctaattttttcagcactatcatcttctctcttcttctcc 41329346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 238 - 432
Target Start/End: Complemental strand, 35296918 - 35296724
Alignment:
Q  238 gtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgttagtcaaattgatcccctc 337  Q
    |||| ||||||||||   ||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||  |||    
T  35296918 gtcctctaaataatttgtagtttacattttggtcctataaattgtaaaactcacattttggtacccttggttttgctccgttagtcaaattgatcatctc 35296819  T
Q  338 cgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctataatgagccatcggtacctaattttt 432  Q
    |||||        |||| |||| ||||||||||||| ||   |||||||||||||||||||||||| |||||||||||| | | |||||||||||    
T  35296818 cgttaattttttaatgtctaaattttttgatatgattttaaccgtttgattgcatgtccattatacatataatgagccaccagcacctaattttt 35296724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 220 - 406
Target Start/End: Original strand, 32653461 - 32653647
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtt 319  Q
    |||||||||||| |||| ||||| |||||||||||| |||||||||||||||  ||| |||||||||||||||||| |||||| |||||||||||||||     
T  32653461 ggcttaattggatatttagtcccttaaataattatgcgtttacattttggtctcataaattgtaaaactcacatttcggtccccttggttttgctccgtc 32653560  T
Q  320 agtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattataccta 406  Q
     |||| | || |||| ||||||||       |||  ||||||||||||||| || ||   |||||||||||||||||||||||||||    
T  32653561 ggtcagaatggtcccatccgttagttttttaatgactaaaatttttgatatcattttaaccgtttgattgcatgtccattataccta 32653647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 219 - 312
Target Start/End: Original strand, 41328216 - 41328309
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttg 312  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||  |||||||||    
T  41328216 aggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcctcttggttttg 41328309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 219 - 326
Target Start/End: Original strand, 39981314 - 39981421
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    ||||||||||||||||||| ||| |||||||||| || |||||||||||||||| ||| ||||||||| |||||||||||||| |||||||||||| |||    
T  39981314 aggcttaattggacatttgatcctctaaataattgtgcgtttacattttggtcccataaattgtaaaattcacattttggtccttttggttttgcttcgt 39981413  T
Q  319 tagtcaaa 326  Q
     |||||||    
T  39981414 cagtcaaa 39981421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 21690726 - 21690616
Alignment:
Q  30 ttctataaaatatatattttattttctatgtgaaacaccagtaaatatttgttccccactcgttgcatattttatgtgcttaaatatgcggaagaaaatt 129  Q
    |||||| ||||||||||| |||||| |||| |||||| || | ||||||| |  ||||||| |||||||||||| |||||||||| | ||||||||||||    
T  21690726 ttctattaaatatatattctattttatatgcgaaacaacatttaatatttttgtcccactccttgcatattttacgtgcttaaatctacggaagaaaatt 21690627  T
Q  130 tttatgaacca 140  Q
    | |||| ||||    
T  21690626 tgtatgtacca 21690616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 343
Target Start/End: Original strand, 666723 - 666847
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    |||||||||||||  ||| ||||||||||||||||| ||||| ||||||| ||  |||  |  ||||| | | |||| ||||||| | ||||||||||||    
T  666723 aggcttaattggatttttagtcccctaaataattatcagttttcattttgatctcataactcataaaattaatatttcggtccctcttgttttgctccgt 666822  T
Q  319 tagtcaaattgatcccctccgttag 343  Q
    ||||||| ||| |||||||||||||    
T  666823 tagtcaatttggtcccctccgttag 666847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 32653784 - 32653728
Alignment:
Q  221 gcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatat 277  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  32653784 gcttaattggacatttggtcccctaaataattatgtatttacattttggtcccatat 32653728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 343
Target Start/End: Complemental strand, 43442878 - 43442758
Alignment:
Q  223 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgttagt 322  Q
    ||||||| || ||||||||||||| |||||    |||| ||| ||||||| |||  | ||||||   |||||||||||||| | ||||||||||||||||    
T  43442878 ttaattgaacttttggtcccctaagtaatttgttgttttcatattggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttagt 43442779  T
Q  323 caaattgatcccctccgttag 343  Q
    ||| ||| |||||||||||||    
T  43442778 caatttggtcccctccgttag 43442758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 326
Target Start/End: Complemental strand, 669507 - 669400
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    |||||||||||||  ||||||||||||| ||||||| ||||| ||||||||||| |||  | ||||||   |||||| |||||||||  ||||||| |||    
T  669507 aggcttaattggatttttggtcccctaagtaattatcagttttcattttggtcccataattcgtaaaatcaacatttcggtcccttttattttgcttcgt 669408  T
Q  319 tagtcaaa 326  Q
    | ||||||    
T  669407 ttgtcaaa 669400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 2414816 - 2414849
Alignment:
Q  293 ttttggtccctttggttttgctccgttagtcaaa 326  Q
    ||||||||||||||||||||||||||||||||||    
T  2414816 ttttggtccctttggttttgctccgttagtcaaa 2414849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 28645071 - 28645125
Alignment:
Q  120 gaagaaaatttttatgaaccaataaaagaaagtcaatatgataaaattttgaaaa 174  Q
    |||||||||||||||| |||||||   || |||| ||||||||||||||||||||    
T  28645071 gaagaaaatttttatgtaccaatatgtgatagtcgatatgataaaattttgaaaa 28645125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 21690582 - 21690546
Alignment:
Q  147 gaaagtcaatatgataaaattttgaaaagtaatgatt 183  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  21690582 gaaagtcgatatgataaaattttgaaaactaatgatt 21690546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 174
Target Start/End: Original strand, 33536845 - 33536873
Alignment:
Q  146 agaaagtcaatatgataaaattttgaaaa 174  Q
    |||||||||||||||||||||||||||||    
T  33536845 agaaagtcaatatgataaaattttgaaaa 33536873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 44376735 - 44376683
Alignment:
Q  291 cattttggtccctttggttttgctccgttagtcaaattgatcccctccgttag 343  Q
    ||||||||||||||   ||||||||| ||||||||||| |||| |||||||||    
T  44376735 cattttggtcccttaacttttgctccattagtcaaattaatccactccgttag 44376683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 44385602 - 44385550
Alignment:
Q  291 cattttggtccctttggttttgctccgttagtcaaattgatcccctccgttag 343  Q
    ||||||||||||||   ||||||||| ||||||||||| |||| |||||||||    
T  44385602 cattttggtcccttaacttttgctccattagtcaaattaatccactccgttag 44385550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 219 - 462
Target Start/End: Original strand, 28610019 - 28610262
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| |||||||||||||||    
T  28610019 aggcttaattggacatttggtcacctaaataattatgagtttacattttggtcccataaattgtaaaattcacattttggtccccttggttttgctccgt 28610118  T
Q  319 tagtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctataatgagccatc 418  Q
     ||||||||||||||| ||||||||       |||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||| |||||| ||    
T  28610119 cagtcaaattgatcccatccgttagttttttaatgtttaaaatttttgatatgatattagccgtttgattgcatgttcattatacctatagtgagccgtc 28610218  T
Q  419 ggtacctaatttttccagcactatcatcttctctttgcttctcc 462  Q
    || ||||||||||||||||||||||||||| ||| | |||||||    
T  28610219 ggcacctaatttttccagcactatcatcttatctcttcttctcc 28610262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 220 - 432
Target Start/End: Original strand, 4919825 - 4920037
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtt 319  Q
    |||||||||||||||||||||| |||||||||||||  |||||| |||||||| ||| ||| |||||  |||||||||||||| |||||||||||||||     
T  4919825 ggcttaattggacatttggtcctctaaataattatgcatttacaatttggtcccataaattataaaatccacattttggtccccttggttttgctccgtc 4919924  T
Q  320 agtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctataatgagccatcg 419  Q
    ||||||||||||||||||| ||||       |  | |||| ||||||||||||| ||   ||||||||||||||||||||||||||||| ||| |||||     
T  4919925 agtcaaattgatcccctccattagttttttaacatctaaattttttgatatgattttaaccgtttgattgcatgtccattatacctatagtgaaccatca 4920024  T
Q  420 gtacctaattttt 432  Q
    | | |||||||||    
T  4920025 gcatctaattttt 4920037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 219 - 326
Target Start/End: Complemental strand, 28611371 - 28611264
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||| ||| |||||||||| ||||||||||||||||    
T  28611371 aggcttaattggatatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaattcatattttggtccttttggttttgctccgt 28611272  T
Q  319 tagtcaaa 326  Q
     |||||||    
T  28611271 cagtcaaa 28611264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 4921177 - 4921081
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctc 315  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||||||  ||||||||||||    
T  4921177 aggcttaattggacatttggtcctctaaataattatgcgtttacattttagtcccataaattgtaaaactcacattttggtcctcttggttttgctc 4921081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 261 - 408
Target Start/End: Original strand, 45699568 - 45699715
Alignment:
Q  261 acattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgttagtcaaattgatcccctccgttagnnnnnnnatgtttaaaa 360  Q
    |||||||||| | ||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||       || | ||||     
T  45699568 acattttggttccataaattgtaaaactcacattttagtccctttggttttgctccgtcagtcaaattgaccccctccattagttttttaatatctaaat 45699667  T
Q  361 tttttgatatgatattcgtcgtttgattgcatgtccattatacctata 408  Q
    ||||||||||||| ||    |||||||||||||||||| |||||||||    
T  45699668 tttttgatatgattttaactgtttgattgcatgtccatcatacctata 45699715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 8321358 - 8321247
Alignment:
Q  223 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgttagt 322  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||||||| ||| ||| ||||||  ||||||| ||||||||  |||||||||||  ||    
T  8321358 ttaattggacatttgatcctctaaataattatgcgtttacattttggtcccataaattttaaaaccaacattttagtccctttaattttgctccgtcggt 8321259  T
Q  323 caaattgatccc 334  Q
    ||||||||||||    
T  8321258 caaattgatccc 8321247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 236 - 324
Target Start/End: Original strand, 19397544 - 19397632
Alignment:
Q  236 tggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgttagtca 324  Q
    ||||||||||||||||||  ||||||||||||||||| ||| ||| ||||||| |||||||||||||| | ||||||||||||||||||    
T  19397544 tggtcccctaaataattaccagtttacattttggtcccataaattttaaaactaacattttggtccctctcgttttgctccgttagtca 19397632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 324
Target Start/End: Complemental strand, 19398916 - 19398814
Alignment:
Q  222 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgttag 321  Q
    ||||||||| | |||||| |||||||||||||   |||||||||||||||| ||| ||||||||||  |||||||||||||| | |||||||||||||||    
T  19398916 cttaattggtcttttggttccctaaataattaccggtttacattttggtcccataaattgtaaaacctacattttggtccctcttgttttgctccgttag 19398817  T
Q  322 tca 324  Q
    |||    
T  19398816 tca 19398814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 45699523 - 45699577
Alignment:
Q  245 aaataattatgagtttacattttggtcctatatattgtaaaactcacattttggt 299  Q
    ||||||||||| |||||||||||||||| ||| ||||||||| ||||||||||||    
T  45699523 aaataattatgtgtttacattttggtcccataaattgtaaaattcacattttggt 45699577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 8320821 - 8320865
Alignment:
Q  290 acattttggtccctttggttttgctccgttagtcaaattgatccc 334  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||||    
T  8320821 acattttggtccctttagttttgctccgctagtcaatttgatccc 8320865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 41374374 - 41374314
Alignment:
Q  139 caataaaagaaagtcaatatgataaaattttgaaaagtaatgattgatttgaaaatatcaa 199  Q
    ||||| ||||||||| |||||||||||||||||||||| |||| |  ||| ||||||||||    
T  41374374 caatataagaaagtcgatatgataaaattttgaaaagtcatgactatttttaaaatatcaa 41374314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 8320779 - 8320832
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcc 272  Q
    |||||||||||||| ||||||||||||| |||||    ||||||||||||||||    
T  8320779 aggcttaattggacttttggtcccctaagtaatttcttgtttacattttggtcc 8320832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 2276278 - 2276362
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccct 303  Q
    ||||||||| || |||||||||||  |||||||| | ||||| |||||| ||||||||  |  |||||||||  |||||||||||    
T  2276278 aggcttaataggtcatttggtccctcaaataattttcagttttcattttagtcctataagtaataaaactcatgttttggtccct 2276362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 34147133 - 34147217
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccct 303  Q
    ||||||||| || |||||||||||  |||||||| | ||||| ||||||||||| |||  |  |||||||||  |||||||||||    
T  34147133 aggcttaataggtcatttggtccctcaaataattttcagttttcattttggtcccataagtaataaaactcatgttttggtccct 34147217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 219 - 452
Target Start/End: Complemental strand, 14479634 - 14479401
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| |    
T  14479634 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtccccttggttttgctccat 14479535  T
Q  319 tagtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctataatgagccatc 418  Q
     ||||||||||||||||||||||||       ||| |||||||||||||||| ||||| | ||||||||||||||||||||||||||||| |||||| ||    
T  14479534 cagtcaaattgatcccctccgttagttttttaatgattaaaatttttgatattatattagccgtttgattgcatgtccattatacctatagtgagccgtc 14479435  T
Q  419 ggtacctaatttttccagcactatcatcttctct 452  Q
     | ||||||||||||||| |||||||||||||||    
T  14479434 agcacctaatttttccaggactatcatcttctct 14479401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 219 - 451
Target Start/End: Complemental strand, 28051726 - 28051495
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| |||||||||||    
T  28051726 aggcttaattggatatttgattccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtccccttgattttgctccgt 28051627  T
Q  319 tagtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctataatgagccatc 418  Q
    |||||||||||||  | |||||||        |||||||||||||||||||||||||| |  |||||||||||||||||||||||||||| |||||| ||    
T  28051626 tagtcaaattgat-tcatccgttaattttttaatgtttaaaatttttgatatgatattagctgtttgattgcatgtccattatacctatagtgagccgtc 28051528  T
Q  419 ggtacctaatttttccagcactatcatcttctc 451  Q
    || ||||||||||||||||||||||||||||||    
T  28051527 ggcacctaatttttccagcactatcatcttctc 28051495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 221 - 407
Target Start/End: Complemental strand, 51446960 - 51446774
Alignment:
Q  221 gcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtta 320  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||||||  ||| |||||||||| |||||||||||||| ||||||||||||||| |    
T  51446960 gcttaattggacatttggtcctctaaataattatgcatttacattttggtcacataaattgtaaaacccacattttggtccccttggttttgctccgtca 51446861  T
Q  321 gtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctat 407  Q
    |||||||||||||||||||||||       || | |||| ||||||||||||| ||    |||||||||||||||||||||||||||    
T  51446860 gtcaaattgatcccctccgttagttttttaatatctaaattttttgatatgattttaactgtttgattgcatgtccattatacctat 51446774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 219 - 326
Target Start/End: Original strand, 28050318 - 28050425
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    |||||||||| ||||||||||||| |||||||||||| |||||||||||||||| ||| |||||||||  |||||||||||||| ||| |||||||||||    
T  28050318 aggcttaattagacatttggtcccttaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttggtccccttgattttgctccgt 28050417  T
Q  319 tagtcaaa 326  Q
    ||||||||    
T  28050418 tagtcaaa 28050425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 219 - 326
Target Start/End: Original strand, 51445587 - 51445694
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||  ||||||||| || ||    
T  51445587 aggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcctcttggttttgatctgt 51445686  T
Q  319 tagtcaaa 326  Q
     |||||||    
T  51445687 cagtcaaa 51445694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 14478264 - 14478370
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtt 319  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||  | |||||||||||||     
T  14478264 ggcttaattggacatttggtcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttggtcctctgggttttgctccgtc 14478363  T
Q  320 agtcaaa 326  Q
    |||||||    
T  14478364 agtcaaa 14478370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 236 - 342
Target Start/End: Complemental strand, 40533706 - 40533600
Alignment:
Q  236 tggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgttagtcaaattgatcccc 335  Q
    ||||||||||||||||||| ||||||||||||||| | ||| ||||||||||  |||||||||||||| | | ||||||||||||||||||  | |||||    
T  40533706 tggtcccctaaataattatcagtttacattttggttccataaattgtaaaaccaacattttggtccctctcgctttgctccgttagtcaaaaaggtcccc 40533607  T
Q  336 tccgtta 342  Q
    |||||||    
T  40533606 tccgtta 40533600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 219 - 343
Target Start/End: Complemental strand, 12667394 - 12667270
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    |||||||||||||  ||| |||| |||||||||||| ||||| ||||||||||||| |  | |||||| | |||||| ||||||| | ||||||||||||    
T  12667394 aggcttaattggatttttagtcctctaaataattatcagttttcattttggtcctagaattcgtaaaattaacatttcggtccctcttgttttgctccgt 12667295  T
Q  319 tagtcaaattgatcccctccgttag 343  Q
    ||||||| ||| |||||||||||||    
T  12667294 tagtcaacttggtcccctccgttag 12667270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 322
Target Start/End: Complemental strand, 40634793 - 40634707
Alignment:
Q  236 tggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgttagt 322  Q
    |||||||||||||||||   ||||||||||||| ||| ||| ||  ||||||||||||||| ||||| ||| |||||||||||||||    
T  40634793 tggtcccctaaataatttgcagtttacattttgatccgataaatcataaaactcacattttcgtccccttgattttgctccgttagt 40634707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 343
Target Start/End: Complemental strand, 48529015 - 48528892
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtt 319  Q
    ||||||||||||| |||||||||| || |||||    |||||||||||||||| |||  | ||||||   ||||||| |||||| |  |||| |||||||    
T  48529015 ggcttaattggacttttggtcccccaagtaatttgttgtttacattttggtcccataactcgtaaaatcaacattttagtccctcttatttttctccgtt 48528916  T
Q  320 agtcaaattgatcccctccgttag 343  Q
    |||||| ||| |||| ||||||||    
T  48528915 agtcaatttggtcccatccgttag 48528892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 41068980 - 41068918
Alignment:
Q  117 gcggaagaaaatttttatgaaccaataaaagaaagtcaatatgataaaattttgaaaagtaat 179  Q
    ||||||||||||||||||| ||  |||  ||||||||||||||||||| ||||||||| ||||    
T  41068980 gcggaagaaaatttttatgtactgatatgagaaagtcaatatgataaagttttgaaaactaat 41068918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 48527531 - 48527616
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctt 304  Q
    |||||||||||||  ||||||||||||| |||||    |||||||||||||||| |||  | |||||| | |||||||||||||||    
T  48527531 aggcttaattggatttttggtcccctaagtaatttgttgtttacattttggtcccataactcgtaaaattaacattttggtccctt 48527616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 326
Target Start/End: Complemental strand, 7306370 - 7306267
Alignment:
Q  223 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgttagt 322  Q
    |||||||||| |||||| || ||| |||||    |||| |||||||||||||||  | |||||| | |||||||||||||| | ||||| ||| ||||||    
T  7306370 ttaattggacttttggttccttaagtaatttgttgttttcattttggtcctataactcgtaaaattaacattttggtccctcttgttttcctctgttagt 7306271  T
Q  323 caaa 326  Q
    ||||    
T  7306270 caaa 7306267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 326
Target Start/End: Original strand, 12665788 - 12665895
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    |||||||||| ||  ||||||||||||| ||||||| |||||  |||||||||| |||  | ||||||   |||||| ||||||| |  ||||||| |||    
T  12665788 aggcttaatttgatttttggtcccctaagtaattatcagtttttattttggtcccataattcgtaaaatcaacatttcggtccctcttattttgcttcgt 12665887  T
Q  319 tagtcaaa 326  Q
    ||||||||    
T  12665888 tagtcaaa 12665895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 219 - 462
Target Start/End: Original strand, 11796566 - 11796808
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||| |    
T  11796566 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcatattttggtccctt-ggttttgctccct 11796664  T
Q  319 tagtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctataatgagccatc 418  Q
     ||||||||||||||| |||| |||       |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||| ||    
T  11796665 cagtcaaattgatcccatccgctagttttttaatgtttaaaacttttgatatgatattagccgtttgattgcatgtccattatacctatagtgagccgtc 11796764  T
Q  419 ggtacctaatttttccagcactatcatcttctctttgcttctcc 462  Q
    || | ||||||||||||||||||||||||||||| | |||||||    
T  11796765 ggcatctaatttttccagcactatcatcttctctcttcttctcc 11796808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 219 - 326
Target Start/End: Complemental strand, 11797652 - 11797545
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  | ||||||   |||||||||||||| | ||||| ||||||    
T  11797652 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtctcataactcgtaaaatcaacattttggtccctcttgtttttctccgt 11797553  T
Q  319 tagtcaaa 326  Q
    ||||||||    
T  11797552 tagtcaaa 11797545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 23325910 - 23326016
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtt 319  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||  |||||||||||||| ||  ||||  ||||||||| |||||     
T  23325910 ggcttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcacagttgagtcctcttggttttggtccgtc 23326009  T
Q  320 agtcaaa 326  Q
    |||||||    
T  23326010 agtcaaa 23326016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 326
Target Start/End: Complemental strand, 23334086 - 23333979
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||  |||||||||| ||| ||  ||||  ||||||||| |||||    
T  23334086 aggcttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactaacagttgagtcctcttggttttggtccgt 23333987  T
Q  319 tagtcaaa 326  Q
     |||||||    
T  23333986 cagtcaaa 23333979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 326
Target Start/End: Original strand, 10735760 - 10735867
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    |||||||||||||| ||||||||||||| ||||||   |||| ||||||||||| |||  | ||||||   || ||||||||||| | ||||||||||||    
T  10735760 aggcttaattggacttttggtcccctaagtaattacttgttttcattttggtcccataactcgtaaaatcaacgttttggtccctcttgttttgctccgt 10735859  T
Q  319 tagtcaaa 326  Q
    ||||||||    
T  10735860 tagtcaaa 10735867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 223 - 342
Target Start/End: Complemental strand, 10737053 - 10736934
Alignment:
Q  223 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgttagt 322  Q
    |||||||||| ||||||||||||| |||||    |||| ||||||||||| |||  | ||||||   |||||||||||||| | |||||||||||||| |    
T  10737053 ttaattggacttttggtcccctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaat 10736954  T
Q  323 caaattgatcccctccgtta 342  Q
    ||| ||| ||||||||||||    
T  10736953 caatttggtcccctccgtta 10736934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 41144636 - 41144530
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtt 319  Q
    ||||||||||||  ||||||||||||| |||||    |||| ||||||||||| ||| ||| |||||   || |||||||||||||| ||||||||||||    
T  41144636 ggcttaattggatttttggtcccctaattaatttgttgttttcattttggtcccataaattctaaaatcaacgttttggtccctttgattttgctccgtt 41144537  T
Q  320 agtcaaa 326  Q
    |||||||    
T  41144536 agtcaaa 41144530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 41405513 - 41405437
Alignment:
Q  98 attttatgtgcttaaatatgcggaagaaaatttttatgaaccaataaaagaaagtcaatatgataaaattttgaaaa 174  Q
    |||||||| ||||| || || |||||||| |||||||| ||||||| || || ||| ||||||||||||||||||||    
T  41405513 attttatgggcttatatctgtggaagaaagtttttatgtaccaatataaaaaggtcgatatgataaaattttgaaaa 41405437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 326
Target Start/End: Complemental strand, 13520864 - 13520794
Alignment:
Q  256 agtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgttagtcaaa 326  Q
    |||||||| ||| || | ||| ||| |||||| |||||||||||||  |||||||||||||||||||||||    
T  13520864 agtttacactttagttccataaattataaaacccacattttggtcctcttggttttgctccgttagtcaaa 13520794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 13519540 - 13519593
Alignment:
Q  290 acattttggtccctttggttttgctccgttagtcaaattgatcccctccgttag 343  Q
    |||||||||||| | | ||||||||||||| |||||||||||||| ||||||||    
T  13519540 acattttggtccttcttgttttgctccgtttgtcaaattgatcccttccgttag 13519593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 399
Target Start/End: Original strand, 9219262 - 9219353
Alignment:
Q  308 ttttgctccgttagtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccatt 399  Q
    ||||||||| |||||||| |||||||||||||||||       |||| |||||||||| || |||| ||   ||||||||||||||| ||||    
T  9219262 ttttgctccattagtcaatttgatcccctccgttagttttttaatgtctaaaattttttatttgattttaaccgtttgattgcatgttcatt 9219353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 35081556 - 35081503
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcc 272  Q
    |||||||||||||| ||||||||||||| ||||| |  |||| |||||||||||    
T  35081556 aggcttaattggacttttggtcccctaagtaattgtttgttttcattttggtcc 35081503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 18615308 - 18615384
Alignment:
Q  98 attttatgtgcttaaatatgcggaagaaaatttttatgaaccaataaaagaaagtcaatatgataaaattttgaaaa 174  Q
    ||||||| || ||||||||||| ||  ||||||||||| ||  |||  |||||||  ||||||||||||||||||||    
T  18615308 attttatttgtttaaatatgcgaaaacaaatttttatgtacgcatatgagaaagttgatatgataaaattttgaaaa 18615384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 219 - 402
Target Start/End: Original strand, 6892 - 7074
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||  |||||||||| ||||||||||||||||||    
T  6892 aggcttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttggttcctttggttttgctccgt 6991  T
Q  319 tagtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattata 402  Q
      ||||||||||| |||||||||||       || | |||| |||||||||| || ||   |||||||||||||||||||||||    
T  6992 cggtcaaattgat-ccctccgttagtttttcaatatctaaattttttgatataattttaaccgtttgattgcatgtccattata 7074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 219 - 334
Target Start/End: Complemental strand, 8309 - 8194
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    ||||||||||| || ||||||||||||| ||||| |  |||||||||||||||| |||  | ||||||   |||||||||||||| | ||||| ||||||    
T  8309 aggcttaattgaacttttggtcccctaagtaattctttgtttacattttggtcccataactcgtaaaatcaacattttggtccctctcgttttactccgt 8210  T
Q  319 tagtcaaattgatccc 334  Q
    ||||||| ||||||||    
T  8209 tagtcaatttgatccc 8194  T

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Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 11722784 - 11722890
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtt 319  Q
    |||||||||||||||||| ||| ||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||  |||||||||||||||     
T  11722784 ggcttaattggacatttgatcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttggtcctcttggttttgctccgtc 11722883  T
Q  320 agtcaaa 326  Q
    |||||||    
T  11722884 agtcaaa 11722890  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 326
Target Start/End: Complemental strand, 21777570 - 21777496
Alignment:
Q  252 tatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgttagtcaaa 326  Q
    ||||||||||||||||||||| |||  |||||||||||||| ||  ||||  ||||||||| ||||| |||||||    
T  21777570 tatgagtttacattttggtcccataagttgtaaaactcacagttgagtcctcttggttttggtccgtcagtcaaa 21777496  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 31794422 - 31794497
Alignment:
Q  98 attttatgtgcttaaatatgcggaagaaaatttttatgaaccaataaaagaaagtcaatatgataaaattttgaaa 173  Q
    ||||||| |||||| ||||||| ||||||| ||||||   || |||  |||||||| |||||||||||||||||||    
T  31794422 attttatttgcttatatatgcgtaagaaaaattttatttgccgatatgagaaagtcgatatgataaaattttgaaa 31794497  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 331
Target Start/End: Complemental strand, 11968594 - 11968484
Alignment:
Q  221 gcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtta 320  Q
    |||||||||||  ||||||||||||| |||||    |||| ||||||||||  |||   ||||||| | || ||||||||||||| ||||||||  ||||    
T  11968594 gcttaattggatttttggtcccctaactaatttgttgttttcattttggtctcataacctgtaaaattaacgttttggtcccttttgttttgctttgtta 11968495  T
Q  321 gtcaaattgat 331  Q
    ||||| |||||    
T  11968494 gtcaatttgat 11968484  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 12262029 - 12261976
Alignment:
Q  146 agaaagtcaatatgataaaattttgaaaagtaatgattgatttgaaaatatcaa 199  Q
    ||||||||||||||||| ||||||||||| |||||| |  ||| ||||||||||    
T  12262029 agaaagtcaatatgatagaattttgaaaactaatgactattttcaaaatatcaa 12261976  T

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Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 219 - 408
Target Start/End: Original strand, 9853564 - 9853753
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    ||||||||||| ||||| | |||  |||||||||||  ||||| |||||||||| ||| ||||||||||| | ||||||||| | | |||||||||||||    
T  9853564 aggcttaattgaacattagctcctttaaataattatatgtttatattttggtcccataaattgtaaaactaatattttggtctcctgggttttgctccgt 9853663  T
Q  319 tagtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctata 408  Q
     ||||||||||||||||||||||||       || | |||| |||||||||| || ||   ||||||||||||| |||||||||||||||    
T  9853664 cagtcaaattgatcccctccgttagttttttaatatctaaattttttgatataattttaaccgtttgattgcatatccattatacctata 9853753  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 219 - 326
Target Start/End: Complemental strand, 9854998 - 9854891
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| |||||||||  |||||||||||||  ||| |||||||||||    
T  9854998 aggcttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttggtcctcttgattttgctccgt 9854899  T
Q  319 tagtcaaa 326  Q
     |||||||    
T  9854898 cagtcaaa 9854891  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 240 - 326
Target Start/End: Original strand, 42793717 - 42793803
Alignment:
Q  240 cccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgttagtcaaa 326  Q
    ||||||||||||||  |||||| |||||||||| ||| ||||||||| | |||||||||||||| | ||||||||||||||||||||    
T  42793717 cccctaaataattaccagtttatattttggtcccataaattgtaaaattaacattttggtccctcttgttttgctccgttagtcaaa 42793803  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 342
Target Start/End: Original strand, 38697170 - 38697276
Alignment:
Q  236 tggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgttagtcaaattgatcccc 335  Q
    ||||||| ||||||||||| | ||||||||||||||  ||| ||| ||||||  ||||||||||||||||  ||||||||| | |||||||  | |||||    
T  38697170 tggtcccttaaataattatcaatttacattttggtctcataaattataaaaccaacattttggtcccttttattttgctccctcagtcaaaaaggtcccc 38697269  T
Q  336 tccgtta 342  Q
    |||||||    
T  38697270 tccgtta 38697276  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 326
Target Start/End: Original strand, 38697865 - 38697972
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgt 318  Q
    |||||||||||  | ||||||||||||| ||||| |   ||||||||||||| | |||  ||||||||   |||||||||||||| | ||||||||||||    
T  38697865 aggcttaattgatcttttggtcccctaagtaattttctatttacattttggttccataacttgtaaaatcaacattttggtccctcttgttttgctccgt 38697964  T
Q  319 tagtcaaa 326  Q
    ||||||||    
T  38697965 tagtcaaa 38697972  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 24910263 - 24910328
Alignment:
Q  46 ttttattttctatgtgaaacaccagtaaatatttgttccccactcgttgcatattttatgtgctta 111  Q
    ||||||| | |||||||||||||  ||||||||||| || ||||||||||| ||||||||||||||    
T  24910263 ttttattctatatgtgaaacaccgttaaatatttgtaccgcactcgttgcagattttatgtgctta 24910328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 325
Target Start/End: Original strand, 28291293 - 28291398
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtt 319  Q
    ||||||||||||  ||||||||||||| ||||||| ||||| ||||||||||| |||  | ||||||   |||||| ||||||| |  ||||||| ||||    
T  28291293 ggcttaattggatttttggtcccctaagtaattatcagttttcattttggtcccataattcgtaaaatcaacatttcggtccctcttattttgcttcgtt 28291392  T
Q  320 agtcaa 325  Q
    ||||||    
T  28291393 agtcaa 28291398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 341
Target Start/End: Original strand, 31844366 - 31844487
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctttggttttgctccgtt 319  Q
    ||||||||||||| |||||||||  || |||||    |||| |||||| ||||  ||  | |||||| | |||||||||||||| | |||||||||||||    
T  31844366 ggcttaattggacttttggtccctaaagtaatttgttgttttcattttagtcccgtaactcgtaaaattaacattttggtccctcttgttttgctccgtt 31844465  T
Q  320 agtcaaattgatcccctccgtt 341  Q
    |||||| ||| |||||||||||    
T  31844466 agtcaatttggtcccctccgtt 31844487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 432
Target Start/End: Original strand, 24191446 - 24191587
Alignment:
Q  291 cattttggtccctttggttttgctccgttagtcaaattgatcccctccgttagnnnnnnnatgtttaaaatttttgatatgatattcgtcgtttgattgc 390  Q
    |||||||||| |||   |||||||| |||| |||||||||||| |||||||||       |||| |||| |||||||| |||| ||   |||||||||||    
T  24191446 cattttggtctcttaacttttgctctgttactcaaattgatccactccgttagtttgttaatgtctaaattttttgatttgattttaaccgtttgattgc 24191545  T
Q  391 atgtccattatacctataatgagccatcggtacctaattttt 432  Q
    ||||||||| || ||||| ||| || || | |||||||||||    
T  24191546 atgtccattgtatctatagtgaaccgtcagcacctaattttt 24191587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 28291483 - 28291400
Alignment:
Q  220 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccct 303  Q
    ||||||||||||  ||| ||||||||||||||||| ||||| || |||||||| |||  | |||||| | |||||| |||||||    
T  28291483 ggcttaattggatttttagtcccctaaataattatcagttttcactttggtcccataactcgtaaaattaacatttcggtccct 28291400  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 174
Target Start/End: Complemental strand, 8826946 - 8826918
Alignment:
Q  146 agaaagtcaatatgataaaattttgaaaa 174  Q
    |||||||||||||||||||||||||||||    
T  8826946 agaaagtcaatatgataaaattttgaaaa 8826918  T

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Target: scaffold1609 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1609
Description:

Target: scaffold1609; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 362 - 301
Alignment:
Q  113 atatgcggaagaaaatttttatgaaccaataaaagaaagtcaatatgataaaattttgaaaa 174  Q
    |||||| |||||||| ||||||| ||| |||  |||||||| ||||||||||||||||||||    
T  362 atatgcagaagaaaaattttatgtaccgatatgagaaagtcgatatgataaaattttgaaaa 301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 304
Target Start/End: Complemental strand, 128710 - 128625
Alignment:
Q  219 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctatatattgtaaaactcacattttggtccctt 304  Q
    ||||||||| || ||||||||||| ||| ||||| | ||||| ||||||||||||||   |  |||||||||  ||||||||||||    
T  128710 aggcttaataggtcatttggtcccttaattaattttaagttttcattttggtcctattactaataaaactcatgttttggtccctt 128625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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