View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9696_low_10 (Length: 299)

Name: NF9696_low_10
Description: NF9696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9696_low_10
NF9696_low_10
[»] chr5 (3 HSPs)
chr5 (20-280)||(6813752-6814012)
chr5 (233-280)||(6806781-6806828)
chr5 (130-237)||(6806496-6806604)
[»] chr4 (3 HSPs)
chr4 (99-173)||(29391148-29391222)
chr4 (98-170)||(8258820-8258891)
chr4 (98-170)||(8272238-8272309)
[»] chr2 (1 HSPs)
chr2 (38-94)||(34881776-34881832)
[»] chr3 (2 HSPs)
chr3 (44-144)||(39736639-39736734)
chr3 (105-174)||(41417131-41417200)
[»] chr7 (1 HSPs)
chr7 (98-167)||(19267374-19267443)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 280
Target Start/End: Original strand, 6813752 - 6814012
Alignment:
Q  20 atagcgtacacatatgtgcaatatcaatcattaattaacatattaaaggtagatattatagatatagaataacaaatgaaattatgagtttgttacaata 119  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6813752 atagcgtacacatatgtgcaatatccatcattaattaacatattaaaggtagaaattatagatatagaataacaaatgaaattatgagtttgttacaata 6813851  T
Q  120 acagccattaattttcttaatttacattttatccactttagatgatccttgcccatatattagacggatttcttttattcttttttgttcggatagataa 219  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  6813852 acaaccattaattttcttaatttacattttatccactttagatgatccttgcccatatattatacggatttcttttattcttttttgtttggatagataa 6813951  T
Q  220 ttctttagattatacatagaaatcaaattttattcaccacaactatattacttttgaattt 280  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  6813952 ttctttagattatacatagaaatcaaattttattcaccccaactattttatttttgaattt 6814012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 6806781 - 6806828
Alignment:
Q  233 acatagaaatcaaattttattcaccacaactatattacttttgaattt 280  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  6806781 acatagaaatcaaattttattcaccccaactatattatttttgcattt 6806828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 6806496 - 6806604
Alignment:
Q  130 attttcttaatttacattttatccactttagatgatccttgcccatatattagacggatttct-tttattcttttttgttcggatagataattctttaga 228  Q
    ||||| |||||||||| |||||  ||||| || ||||||||||||| ||||| ||    || | |||||||||||||||| | |||||| ||||||||||    
T  6806496 atttttttaatttacactttatatactttggaggatccttgcccatttattatacaatcttttatttattcttttttgtttgcatagatgattctttaga 6806595  T
Q  229 ttatacata 237  Q
    ||| |||||    
T  6806596 ttagacata 6806604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 29391222 - 29391148
Alignment:
Q  99 aattatgagtttgttacaataacagccattaattttcttaatttacattttatccactttagatgatccttgccc 173  Q
    |||||||||||||||||||||||| || | |||||||||| |||||| ||||  ||||||||| || ||||||||    
T  29391222 aattatgagtttgttacaataacaaccctcaattttcttactttacactttactcactttagaggacccttgccc 29391148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 8258891 - 8258820
Alignment:
Q  98 aaattatgagtttgttacaataacagccattaattttcttaatttacattttatccactttagatgatccttg 170  Q
    |||||||||| |||||||||||||| || || | ||||| | |||||  ||||||||||||||| ||||||||    
T  8258891 aaattatgagcttgttacaataacaacctttga-tttctcattttaccctttatccactttagaggatccttg 8258820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 8272309 - 8272238
Alignment:
Q  98 aaattatgagtttgttacaataacagccattaattttcttaatttacattttatccactttagatgatccttg 170  Q
    |||||||||| |||||||||||||| || || | ||||| | |||||  ||||||||||||||| ||||||||    
T  8272309 aaattatgagcttgttacaataacaacctttga-tttctcattttaccctttatccactttagaggatccttg 8272238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 34881832 - 34881776
Alignment:
Q  38 caatatcaatcattaattaacatattaaaggtagatattatagatatagaataacaa 94  Q
    |||||||||||||||||||||| ||||||| || |||||||||||| | ||||||||    
T  34881832 caatatcaatcattaattaacaaattaaagataaatattatagatacataataacaa 34881776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 39736639 - 39736734
Alignment:
Q  44 caatcattaattaacatattaaaggtagatattatagatatagaataacaaatgaaattatgagtttgttacaataacagccattaattttcttaattta 143  Q
    ||||| |||||||||| ||||||| | ||||||||||||||| ||||||     |||  ||||||||||||| |||||| || || ||||||||| ||||    
T  39736639 caatctttaattaacaaattaaagatcgatattatagatatataataac-----aaaccatgagtttgttaccataacaacctttgattttcttacttta 39736733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 41417200 - 41417131
Alignment:
Q  105 gagtttgttacaataacagccattaattttcttaatttacattttatccactttagatgatccttgccca 174  Q
    |||||||||||||||||| || || ||||||||| |||||| |||   | ||||||| ||||||||||||    
T  41417200 gagtttgttacaataacaacccttgattttcttactttacacttttctcgctttagaggatccttgccca 41417131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 19267374 - 19267443
Alignment:
Q  98 aaattatgagtttgttacaataacagccattaattttcttaatttacattttatccactttagatgatcc 167  Q
    |||| |||||||||||| ||||||| || || ||||||| |||||||| ||||  ||||||||| |||||    
T  19267374 aaatcatgagtttgttaaaataacaacccttgattttctcaatttacactttactcactttagaggatcc 19267443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University