View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9696_low_11 (Length: 232)
Name: NF9696_low_11
Description: NF9696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_low_11 |
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| [»] scaffold0042 (1 HSPs) |
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| [»] scaffold0599 (1 HSPs) |
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| [»] scaffold0534 (1 HSPs) |
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Alignment Details
Target: scaffold0042 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 11452 - 11251
Alignment:
| Q |
14 |
caaaggtaagggtagtaaccacgaaatactctctaacatgcttcactcaatgaaagcaataactaatgatgcattgcaatattaggtggtaaatggaatc |
113 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11452 |
caaaggtaagggtagtaaccacgaaatactctctaaaatgcttcactcaatgaaagcaataactaatgatgcattgcaatattaggtggtaaatggaatc |
11353 |
T |
|
| Q |
114 |
agaactagaagggtttggattgagcaaagagagtatgttgtttgcttatcatgtagcagcggccagcatatttgagcctgagaggtctctagagagactt |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11352 |
agaactagaagggtttggattgagcaaagagagtatgttgtttgcttatcatgtagcagctgccagcatatttgagcctgagaggtctctagagagactt |
11253 |
T |
|
| Q |
214 |
gc |
215 |
Q |
| |
|
|| |
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|
| T |
11252 |
gc |
11251 |
T |
|
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Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 11911453 - 11911654
Alignment:
| Q |
14 |
caaaggtaagggtagtaaccacgaaatactctctaacatgcttcactcaatgaaagcaataactaatgatgcattgcaatattaggtggtaaatggaatc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11911453 |
caaaggtaagggtagtaaccacgaaatactctctaacatgcttcactcaatgaaagcaataactaatgatgcattgcaatattaggtggtaaatggaatt |
11911552 |
T |
|
| Q |
114 |
agaactagaagggtttggattgagcaaagagagtatgttgtttgcttatcatgtagcagcggccagcatatttgagcctgagaggtctctagagagactt |
213 |
Q |
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| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11911553 |
aaaactagaagggtttggattgagcaaagagagtatgttgttggcttatcatgtagcagcgaccagcatatttgagcctgagaggtctctagagagactt |
11911652 |
T |
|
| Q |
214 |
gc |
215 |
Q |
| |
|
|| |
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|
| T |
11911653 |
gc |
11911654 |
T |
|
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Target: scaffold0599 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 3147 - 3348
Alignment:
| Q |
14 |
caaaggtaagggtagtaaccacgaaatactctctaacatgcttcactcaatgaaagcaataactaatgatgcattgcaatattaggtggtaaatggaatc |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3147 |
caaaggtaagggtagtaaccacgaaatactctctaaaatgcttcactcaatgaaagcaataactaatgatgcattgcaatattaggtggtaaatggaata |
3246 |
T |
|
| Q |
114 |
agaactagaagggtttggattgagcaaagagagtatgttgtttgcttatcatgtagcagcggccagcatatttgagcctgagaggtctctagagagactt |
213 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
3247 |
aaaactagaagggtttggattgagcaaagagagtatgttgttggcttatcatgtagcagcgaccagcatatttgagcctgagaggtctctagagagactt |
3346 |
T |
|
| Q |
214 |
gc |
215 |
Q |
| |
|
|| |
|
|
| T |
3347 |
gc |
3348 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 80 - 215
Target Start/End: Original strand, 19851488 - 19851627
Alignment:
| Q |
80 |
tgatgcattgcaatattaggtggtaaatggaatc----agaactagaagggtttggattgagcaaagagagtatgttgtttgcttatcatgtagcagcgg |
175 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
19851488 |
tgatgcattccaatattaggtggtacatggaatcaatcagaactagaagggtttggattgagcaaagagagtatgttgtttgcttattatgtagcagcgg |
19851587 |
T |
|
| Q |
176 |
ccagcatatttgagcctgagaggtctctagagagacttgc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
19851588 |
ccagcatatttgagcctgagaggtctctagagagaattgc |
19851627 |
T |
|
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Target: scaffold0534 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 9083 - 9188
Alignment:
| Q |
110 |
aatcagaactagaagggtttggattgagcaaagagagtatgttgtttgcttatcatgtagcagcggccagcatatttgagcctgagaggtctctagagag |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9083 |
aatcagaactagaagggtttggattgagcaaggagagtatgttgtttgcttattatgtagcagcggccagcatatttgagcctgagaggtctctagagag |
9182 |
T |
|
| Q |
210 |
acttgc |
215 |
Q |
| |
|
|||||| |
|
|
| T |
9183 |
acttgc |
9188 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 17231106 - 17231211
Alignment:
| Q |
110 |
aatcagaactagaagggtttggattgagcaaagagagtatgttgtttgcttatcatgtagcagcggccagcatatttgagcctgagaggtctctagagag |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| |
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|
| T |
17231106 |
aatcagaactagaagggtttggattgagcaaagagagtatgttgtttgcttattatgtagcagcggccaacatatttgagcctgaggggtctctagagag |
17231205 |
T |
|
| Q |
210 |
acttgc |
215 |
Q |
| |
|
|||||| |
|
|
| T |
17231206 |
acttgc |
17231211 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 28049828 - 28049933
Alignment:
| Q |
110 |
aatcagaactagaagggtttggattgagcaaagagagtatgttgtttgcttatcatgtagcagcggccagcatatttgagcctgagaggtctctagagag |
209 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28049828 |
aatcagaactataagggtttggattgagcaatgagagtatgttgtttgcttattatgtagcagcggccagcatatttgagcctgagaggtctctagagag |
28049927 |
T |
|
| Q |
210 |
acttgc |
215 |
Q |
| |
|
|||||| |
|
|
| T |
28049928 |
acttgc |
28049933 |
T |
|
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Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 37960265 - 37960388
Alignment:
| Q |
92 |
atattaggtggtaaatggaatcagaactagaagggtttggattgagcaaagagagtatgttgtttgcttatcatgtagcagcggccagcatatttgagcc |
191 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||| |||||| ||||| | || |||||||| ||||||||||||||| |||||||||||| |
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|
| T |
37960265 |
atattaggtggtacatggaatcagaacaagaagggtttggattaagcaaaaagagtctcctgattgcttattatgtagcagcggccaacatatttgagcc |
37960364 |
T |
|
| Q |
192 |
tgagaggtctctagagagacttgc |
215 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
37960365 |
tgagaggtctctagagagacttgc |
37960388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 37960196 - 37960234
Alignment:
| Q |
44 |
ctctaacatgcttcactcaatgaaagcaataactaatga |
82 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
37960196 |
ctctaacatgcttcactcaatcaaagcaacaactaatga |
37960234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 3179524 - 3179476
Alignment:
| Q |
167 |
tagcagcggccagcatatttgagcctgagaggtctctagagagacttgc |
215 |
Q |
| |
|
||||||| || ||||||||| ||||||| ||||||| |||||||||||| |
|
|
| T |
3179524 |
tagcagcagcaagcatatttcagcctgaaaggtctcaagagagacttgc |
3179476 |
T |
|
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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 12634433 - 12634313
Alignment:
| Q |
95 |
ttaggtggtaaatggaatcagaactagaagggtttggattgagcaaagagagtatgttgtttgcttatcatgtagcagcggccagcatatttgagcctga |
194 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||||| | | |||||||| ||||||||||||| |||||||||||||| || |
|
|
| T |
12634433 |
ttaggtggtacatggaatcagaactagaagggtttggattgagcaaaaagagtctcctaattgcttattatgtagcagcggctagcatatttgagcccga |
12634334 |
T |
|
| Q |
195 |
gaggtctctagagagacttgc |
215 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
12634333 |
gaggtctctagagagacttgc |
12634313 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 12634535 - 12634467
Alignment:
| Q |
14 |
caaaggtaagggtagtaaccacgaaatactctctaacatgcttcactcaatgaaagcaataactaatga |
82 |
Q |
| |
|
|||||||||| ||| ||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12634535 |
caaaggtaagagtaataaccacataacactctctaacatgcttcactcaatgaaagcaataactaatga |
12634467 |
T |
|
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