View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9696_low_4 (Length: 419)

Name: NF9696_low_4
Description: NF9696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9696_low_4
NF9696_low_4
[»] chr7 (2 HSPs)
chr7 (147-403)||(10621249-10621505)
chr7 (168-201)||(20471985-20472018)
[»] chr4 (2 HSPs)
chr4 (11-128)||(18053266-18053382)
chr4 (11-103)||(21689916-21690007)
[»] chr8 (1 HSPs)
chr8 (11-128)||(17651981-17652097)
[»] chr3 (1 HSPs)
chr3 (64-128)||(8438094-8438158)
[»] chr6 (2 HSPs)
chr6 (290-403)||(17266499-17266612)
chr6 (295-403)||(17278596-17278704)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 147 - 403
Target Start/End: Complemental strand, 10621505 - 10621249
Alignment:
Q  147 ttaattcgcttcttttatttgcagtaatgttcccggtgaagaaggtagaagcacacaattgttccataggtccttgttcaacaccatgggcaacatgcgg 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10621505 ttaattcgcttcttttatttgcagtaatgttcccggtgaagaaggtagaagcacaccattgttccataggtccttgttcaacaccatgggcaacatgcgg 10621406  T
Q  247 tagtgaatattgtatttgtatccctatgggatctagtaatatatgccaaccttcatcatataaagatgttgtgaagattactagaaaaaatcataacttt 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  10621405 tagtgaatattgtatttgtatccctatgggatctagtaatatatgccaaccttcatcatataaagatgttgtgaagattaccggaaaaaatcataacttt 10621306  T
Q  347 tgtcaatcccatgtggaatgcaaggagaagggacatgggagcttctgtgctcgttat 403  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10621305 tgtcaatctcatgtggaatgcaaggagaagggacgtgggagcttctgtgctcgttat 10621249  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 20471985 - 20472018
Alignment:
Q  168 cagtaatgttcccggtgaagaaggtagaagcaca 201  Q
    |||||||||||||| |||||||||||||||||||    
T  20471985 cagtaatgttcccgatgaagaaggtagaagcaca 20472018  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 18053266 - 18053382
Alignment:
Q  11 cagagagatatgtttttagatttcgcatttcaaatcctccttcgnnnnnnnnncttgtaatttgtaatacagaataatacagaattacatattaggaata 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||||         |||||||||||||||||| ||||||||||||||||||||||||||||    
T  18053266 cagagagatatgtttttagatctcgcatttcaaatcctccttcgtttttttt-cttgtaatttgtaatacataataatacagaattacatattaggaata 18053364  T
Q  111 tgatcaataattatacat 128  Q
    ||||||||||||||||||    
T  18053365 tgatcaataattatacat 18053382  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 21689916 - 21690007
Alignment:
Q  11 cagagagatatgtttttagatttcgcatttcaaatcctccttcgnnnnnnnnncttgtaatttgtaatacagaataatacagaattacatatt 103  Q
    ||||||||||||||||||||| |||||||||||||||||||| |         |||||||||||||||||| |||||||||||||||||||||    
T  21689916 cagagagatatgtttttagatctcgcatttcaaatcctcctttg-ttttttttcttgtaatttgtaatacataataatacagaattacatatt 21690007  T

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Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 17651981 - 17652097
Alignment:
Q  11 cagagagatatgtttttagatttcgcatttcaaatcctccttcgnnnnnnnnncttgtaatttgtaatacagaataatacagaattacatattaggaata 110  Q
    ||||||||||||||||||||| |||||||||||||||||||| |         |||||||||||||||||| ||||||||||||||||||||||||||||    
T  17651981 cagagagatatgtttttagatctcgcatttcaaatcctcctttgtttttttt-cttgtaatttgtaatacataataatacagaattacatattaggaata 17652079  T
Q  111 tgatcaataattatacat 128  Q
    ||||||||||||||||||    
T  17652080 tgatcaataattatacat 17652097  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 8438158 - 8438094
Alignment:
Q  64 cttgtaatttgtaatacagaataatacagaattacatattaggaatatgatcaataattatacat 128  Q
    ||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  8438158 cttgtaatttgtattacataataatacagaattacatattaggagtatgatcaataattatacat 8438094  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 290 - 403
Target Start/End: Complemental strand, 17266612 - 17266499
Alignment:
Q  290 tgccaaccttcatcatataaagatgttgtgaagattactagaaaaaatcataacttttgtcaatcccatgtggaatgcaaggagaagggacatgggagct 389  Q
    ||||||||| |||||||||||||| | ||||||||  || | ||||| | |||||||||||| || ||||| ||||| || |||||||||  ||||||||    
T  17266612 tgccaacctgcatcatataaagatctagtgaagatatctgggaaaaaccctaacttttgtcagtctcatgtcgaatgtaaagagaagggaagtgggagct 17266513  T
Q  390 tctgtgctcgttat 403  Q
    |||| |||||||||    
T  17266512 tctgcgctcgttat 17266499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 403
Target Start/End: Complemental strand, 17278704 - 17278596
Alignment:
Q  295 accttcatcatataaagatgttgtgaagattactagaaaaaatcataacttttgtcaatcccatgtggaatgcaaggagaagggacatgggagcttctgt 394  Q
    |||| ||||||| |||||| ||||||| ||  || |||||||||  |||| |||||| || ||||||||||||||||||||||||| ||| ||||| ||     
T  17278704 acctgcatcatacaaagatcttgtgaaaatacctggaaaaaatccaaactattgtcagtctcatgtggaatgcaaggagaagggacgtggtagcttttgc 17278605  T
Q  395 gctcgttat 403  Q
    |||||||||    
T  17278604 gctcgttat 17278596  T

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