View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9696_low_5 (Length: 409)
Name: NF9696_low_5
Description: NF9696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 6242865 - 6242973
Alignment:
| Q |
67 |
aattgcttggatttatttgggtttgtggatgttaatctttgctttgatgtgctataagaataaaaaagaactctatcaatgaattccaaaaaggatcaag |
166 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| |||||| |||||||||||||||||| |
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| T |
6242865 |
aattgcttggatttatttgggtttgtggatcttaatctttgctttgatgttctataagaatcgaaaagaactctttcaatggattccaaaaaggatcaag |
6242964 |
T |
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| Q |
167 |
aatgttatt |
175 |
Q |
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||||||||| |
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| T |
6242965 |
aatgttatt |
6242973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 6325805 - 6325675
Alignment:
| Q |
67 |
aattgcttggatttatttgggtttgtggatgttaatctttgctttgatgtgctataagaataaaaaagaactctatcaatgaattccaaaaaggatcaag |
166 |
Q |
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|||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||| |||||| |||||||||||||| |||||| ||||||||||| |
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| T |
6325805 |
aattgcatggatttatttgggtttttggatctttatctttgctttgatgtgctataagagtaaaaatgaactctatcaatggattccagaaaggatcaag |
6325706 |
T |
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| Q |
167 |
aatgttattgaggggaagagtgagagtggta |
197 |
Q |
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| T |
6325705 |
aaagtttttgagggtaaaactgagagtggta |
6325675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 67 - 180
Target Start/End: Complemental strand, 6346399 - 6346286
Alignment:
| Q |
67 |
aattgcttggatttatttgggtttgtggatgttaatctttgctttgatgtgctataagaataaaaaagaactctatcaatgaattccaaaaaggatcaag |
166 |
Q |
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|||||||||||||| |||||| |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
6346399 |
aattgcttggatttttttgggcttgtggatcttactctttgctttgatgtgctatgagaataaaaaagaactctatcaaatgattccacaaaggatcaag |
6346300 |
T |
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| Q |
167 |
aatgttattgaggg |
180 |
Q |
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|||||| ||||||| |
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| T |
6346299 |
aatgtttttgaggg |
6346286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 6333282 - 6333181
Alignment:
| Q |
67 |
aattgcttggatttatttgggtttgtggatgttaatctttgctttgatgtgctataagaataaaaaagaactctatcaatgaattccaaaaaggatcaag |
166 |
Q |
| |
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|||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| ||| ||||||||| |||||| ||||||||||| |
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| T |
6333282 |
aattgcttggatttatttgggtttgttgatcttcatctttgctttgatgtgctataagagtaaaaatgaaatctatcaattgattccagaaaggatcaag |
6333183 |
T |
|
| Q |
167 |
aa |
168 |
Q |
| |
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|| |
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| T |
6333182 |
aa |
6333181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 180
Target Start/End: Original strand, 6219711 - 6219827
Alignment:
| Q |
67 |
aattgcttggatttatttgggtttgtggatgttaatctttgctttgatgtgctataagaataaaaaagaactctatcaatga---attccaaaaaggatc |
163 |
Q |
| |
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|||||||||||||| |||| | |||||||| ||| ||||| |||||||||||||| ||||| |||||| ||||||||| | |||||| |||||||| |
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| T |
6219711 |
aattgcttggatttttttgtgcttgtggatcttactcttttctttgatgtgctatgagaatcgaaaagagctctatcaaatattgattccagaaaggatc |
6219810 |
T |
|
| Q |
164 |
aagaatgttattgaggg |
180 |
Q |
| |
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||||| ||| ||||||| |
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| T |
6219811 |
aagaaagtttttgaggg |
6219827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 180
Target Start/End: Original strand, 6219198 - 6219310
Alignment:
| Q |
68 |
attgcttggatttatttgggtttgtggatgttaatctttgctttgatgtgctataagaataaaaaagaactctatcaatgaattccaaaaaggatcaaga |
167 |
Q |
| |
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|||||||||||| |||| || ||| ||| ||||| ||| |||||||| ||||||| ||| |||||||||||||||| ||||| |||||||||||| |
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| T |
6219198 |
attgcttggattgatttcgggctgttgatcttaatattttctttgatgggctataaaaatcgaaaagaactctatcaaatgattccccaaaggatcaaga |
6219297 |
T |
|
| Q |
168 |
atgttattgaggg |
180 |
Q |
| |
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|| ||||||||| |
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| T |
6219298 |
attctattgaggg |
6219310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 6243006 - 6243046
Alignment:
| Q |
230 |
ggagttgaatcgcttcctgtatagagcaattgattgcattt |
270 |
Q |
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||||||||||| |||||||| ||||||||||| |||||||| |
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| T |
6243006 |
ggagttgaatcacttcctgtctagagcaattgtttgcattt |
6243046 |
T |
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