View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9696_low_7 (Length: 388)
Name: NF9696_low_7
Description: NF9696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 371
Target Start/End: Complemental strand, 6807525 - 6807164
Alignment:
| Q |
10 |
acacagagaagaggcatgatgcagattttttcagaaagttttcaaaattttgtggataattggaaccttcgtttaatggttgtgttcagcctcaacatcc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6807525 |
acacagagaagaggcatgatgcagattttttcagaaagttttcaaaactttgtggataattggaaccttcgtttaatggttgtgttcagcctcaacatcc |
6807426 |
T |
|
| Q |
110 |
aattcattctcatactgtttggaactaagagaaagttctggacatgcatttggctcagaatcatactatggtctgcctacttgtttgcagattggttagc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6807425 |
aattcattctcatactgtttggaactaagagaaagttctggacatgcatctggctcagaatcatactatggtctgcctacttgtttgcagattggttagc |
6807326 |
T |
|
| Q |
210 |
aacaacctcacttggtgttctttcaaataaagaaggtgaaaacaaaggtgattctgttgaaccaaaacatgtcattattgctttgtggggtccacttctt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6807325 |
aacaacctcacttggtgttctttcaaataaagaaggtgaaaacaaaggtgattctgttgaaccaaaacatgtcattattgctttgtggggtccacttctt |
6807226 |
T |
|
| Q |
310 |
cttcttcaccttggtggccaagatactattactgcttactcaatggaagacaatgcactttg |
371 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6807225 |
ctccttcaccttggtggccaagatactattactgcttactcaatggaagacaatgcactttg |
6807164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 10 - 371
Target Start/End: Complemental strand, 7329710 - 7329349
Alignment:
| Q |
10 |
acacagagaagaggcatgatgcagattttttcagaaagttttcaaaattttgtggat-aattggaaccttcgtttaatggttgtgttcagcctcaacatc |
108 |
Q |
| |
|
|||||||| |||||||||||||| |||||| |||||||||| || || ||| |||| |||||||| |||||||| ||||||||||| |||||| |||| |
|
|
| T |
7329710 |
acacagaggagaggcatgatgcatatttttccagaaagtttacagaaattt-tggagcaattggaatcttcgttttatggttgtgttaagcctcggcatc |
7329612 |
T |
|
| Q |
109 |
caattcattctcatactgtttggaactaagagaaagttctggacatgcatttggctcagaatcatactatggtctgcctacttgtttgcagattggttag |
208 |
Q |
| |
|
|||| ||||||| || ||||||||| ||||||||||||| ||| |||| | || |||||||||||||||||||| || ||||||||||||||||| | |
|
|
| T |
7329611 |
caatgcattctcttattgtttggaaacaagagaaagttctacacaagcatctatcttagaatcatactatggtctgcttatttgtttgcagattggtttg |
7329512 |
T |
|
| Q |
209 |
caacaacctcacttggtgttctttcaaataaagaaggtgaaaacaaaggtgattctgttgaaccaaaacatgtcattattgctttgtggggtccacttct |
308 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| || |||||||||| ||||| ||| |||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
7329511 |
caacaacctcacttggtgttctttcaagtaaagagggagaaaacaaagatgattttgtggaaccaaagtatgtcattatcgctttgtggggtccacttct |
7329412 |
T |
|
| Q |
309 |
tcttcttcaccttggtggccaagatactattactgcttactcaatggaagacaatgcactttg |
371 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7329411 |
tctcattcaccttggtggttctgatactattactgcttactctatggaagacaatgcactttg |
7329349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University