View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9696_low_9 (Length: 311)
Name: NF9696_low_9
Description: NF9696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9696_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 44850946 - 44851234
Alignment:
| Q |
17 |
caccctactcttcatattgaaagcgtcgtgtcggtgtcagtttcccacaccaacacatgtggttatattcaaaaatttcattttctcaaattaatattgg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44850946 |
caccctactcttcatattgaaagcgtcgtgtcggtgtcagtttcccacaccaacacatgtggttatattcaaaaatttcattttctcaaattaatattgg |
44851045 |
T |
|
| Q |
117 |
tgtcgagacttgtcgatattagtattgtgtcccggtgtttgtgttagcacttcctattgcagtttggttaatattggtacaaatctacaggggatattat |
216 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44851046 |
tgtcgagacttgtcaatattagtattgtgtcccggtgtttgtgttggcacttcctattgcagtttggttaatgttggtacaaatctacaggggatattat |
44851145 |
T |
|
| Q |
217 |
aggtgcagcacatgcaagggctgttcagccaaaaaacaagtagagagaagcagcacagatgcttcattgctcatcatcacctatgcttc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44851146 |
aggtgcagcacatgcaagggctgttcagccaaaaaacaagtagagagaagcagcacagatgcttcattgctcatcatcacctatacttc |
44851234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 16464179 - 16464130
Alignment:
| Q |
71 |
acatgtggttatattcaaaaatttcattttctcaaattaatattggtgtc |
120 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
16464179 |
acatgtgtttacattcaacaatttcattttctcaaattactattggtgtc |
16464130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 43534975 - 43534935
Alignment:
| Q |
69 |
acacatgtggttatattcaaaaatttcattttctcaaatta |
109 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
43534975 |
acacatgtagttacattcaaatatttcattttctcaaatta |
43534935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 11781565 - 11781624
Alignment:
| Q |
63 |
acaccaacacatgtggttatattcaaaaatttcattttctcaaattaatattggtgtcga |
122 |
Q |
| |
|
||||||| ||||| |||| ||||||| ||||||||||||||||||| || ||||||||| |
|
|
| T |
11781565 |
acaccaaagcatgtagttacattcaaatatttcattttctcaaattattactggtgtcga |
11781624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 10735261 - 10735215
Alignment:
| Q |
75 |
gtggttatattcaaaaatttcattttctcaaattaatattggtgtcg |
121 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||| ||||||||||| |
|
|
| T |
10735261 |
gtggttgtattcaaatatttcattttcccaaattattattggtgtcg |
10735215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 39828522 - 39828477
Alignment:
| Q |
64 |
caccaacacatgtggttatattcaaaaatttcattttctcaaatta |
109 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||| ||||||||||| |
|
|
| T |
39828522 |
caccaacacatgtggttacattcaattatttcatattctcaaatta |
39828477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 30127682 - 30127719
Alignment:
| Q |
69 |
acacatgtggttatattcaaaaatttcattttctcaaa |
106 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
30127682 |
acacatgtggttacattcaataatttcattttctcaaa |
30127719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 3587971 - 3587931
Alignment:
| Q |
69 |
acacatgtggttatattcaaaaatttcattttctcaaatta |
109 |
Q |
| |
|
||||||||||||| ||||||| |||||| |||||||||||| |
|
|
| T |
3587971 |
acacatgtggttacattcaaatatttcactttctcaaatta |
3587931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 30243175 - 30243122
Alignment:
| Q |
69 |
acacatgtggttatattcaaaaatttcattttctcaaattaatattggtgtcga |
122 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||| ||| |||||||| |
|
|
| T |
30243175 |
acacatgtggttatattcaactatttcattctctcaaattgttatcggtgtcga |
30243122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University