View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9697_high_1 (Length: 847)
Name: NF9697_high_1
Description: NF9697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9697_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 477 - 825
Target Start/End: Original strand, 43300617 - 43300965
Alignment:
| Q |
477 |
tctttgaagcatgaagtaatgttaggtgcattggttaagctgttaaaaataaaatgaaatgaaaattagcatttcatcttacgactctttcctatttttt |
576 |
Q |
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| T |
43300617 |
tctttgaagcatgaagtaatgttaggtgcattggttgagctgttaaaaataaaatgaaatgaaaattagcattttatattacgactctttcctatttttt |
43300716 |
T |
|
| Q |
577 |
aggtgtgggggaggtggggggagaaatttcaataaaatagtagggagtgaagcccagctcattactctgggcctgtccaatgagaattgaatactctacc |
676 |
Q |
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| T |
43300717 |
tggtgtgggggaggtggggggagaaatttcaataaaatagtagggagtgaagcccagctgattactttgggcctgtccaatgagaattgaatactctacc |
43300816 |
T |
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| Q |
677 |
ctaagtcccaccgtaaccatttctgcatatttgttctagcaccttctttcttcctcgttctcgttttcttctacagttcaacaccacgctctgaacccgt |
776 |
Q |
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| T |
43300817 |
ctaagtcccaccgtaaccatttctgcatatttgttctagcaccttctttcttcctcgttctcgttttcttctacagttcaacaccacgctctgaacccgt |
43300916 |
T |
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| Q |
777 |
aacatctcaccaccgctcttaggtttcaaactccaatctcagttcactt |
825 |
Q |
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| T |
43300917 |
aacatctcaccaccgctcttaggtttcaaactccagtctcagttcactt |
43300965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 43300047 - 43300341
Alignment:
| Q |
18 |
gatttttgctgaaatttcctaccaatgtacttgaggaatgttggaaaaattgatgaattgatcatttactaaaagtatcatgtatggtacctttacattt |
117 |
Q |
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| T |
43300047 |
gatttttgctaaaatttcctaccaatgtacttgaggaatgttggaaaaattgatgaattgatcatttactaaaagtatcatgtatggtacctttacattt |
43300146 |
T |
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| Q |
118 |
tctatgtttttgggatgcatttttgttgtgtaattctgattttactggtgtaggctattttaaatttagtagtctcacttttgtcttgcatgtctctcgg |
217 |
Q |
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| T |
43300147 |
tctatgtttttaggatgcatttttgttgtgtcattctcattttactggtgtaggctattttaaatttagtagtctcacttttgtcttgcatgtctctcgg |
43300246 |
T |
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| Q |
218 |
atttcagtttcttgagcaatatggagaagtaagtatgttggatttaaaaggtgctgacgcaacaaaagttgttcttgttattggaatctacaaaa |
312 |
Q |
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| T |
43300247 |
atttcagtttcttgagcaatatggagaagtaagtatgttggatttaaaaggtgctgatgcaacaaaagttgttcttgttattggaatctacaaaa |
43300341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 345 - 480
Target Start/End: Original strand, 43300420 - 43300555
Alignment:
| Q |
345 |
cttgactaaacttttgtcgatagtgtatcatcataatttataatttatatacactagcgtatgctaaacaaataaatccattttacactgcaaattttca |
444 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43300420 |
cttgagtaaacttttgtcgatagtgtatcatcataatttataatttatatacactagcgtatgctaaacaaataaatccattttacactgcaaattttca |
43300519 |
T |
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| Q |
445 |
tcgtgaaaacaggctagtttccatggttaatgtctt |
480 |
Q |
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| T |
43300520 |
tcgtgaaaacagactagttttcatggttaatgtctt |
43300555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 27646999 - 27647287
Alignment:
| Q |
18 |
gatttttgctgaaatttcctaccaatgtacttgaggaatgttggaaaaattgatgaattgatcatttactaaaagtatcatgtatggtacctttacattt |
117 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| ||||| |
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| T |
27646999 |
gatttttgctgaaatttcctaccaatgtactcgaggaatgttggaaaaattgacgaattgatcatttactaaaagtatcatgtatagcgccttttcattt |
27647098 |
T |
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| Q |
118 |
tctatgtttttgggatgcatttttgttgtgtaattctgattttactggtgtaggctattttaaatt--tagtagtctcacttttgtcttgcatgtctctc |
215 |
Q |
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| T |
27647099 |
tctatgtttttgggatgcttttttgttatgtaattctcattttactagtagaggctattttagatttatagtattctcacttttgtcttgcatatatctt |
27647198 |
T |
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| Q |
216 |
ggatttcagtttcttgagcaatatggagaagtaagtatgttggatttaaaaggtgctgacgcaacaaaagttgttcttgttattggaat |
304 |
Q |
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| T |
27647199 |
ggatttcagtttcttgagcaatatggagaagtgagtatgttggatttaaaaggtgctgatgcaacaaaagttgttcttgttattggaat |
27647287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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