View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9697_high_3 (Length: 487)
Name: NF9697_high_3
Description: NF9697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9697_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Complemental strand, 15366674 - 15366212
Alignment:
| Q |
19 |
attctgccttcaatacatgggatgagactgaagtagatgattcggatgagctacaggaaagtgacggggagagtcaagagtttgccactgtgctgacggt |
118 |
Q |
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| T |
15366674 |
attctgccttcaatacatgggatgagactgaagtagatgattcggatgagctacaggaaagtgacggggagagtcaagagtttgccactgtgctgacggt |
15366575 |
T |
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| Q |
119 |
ggatggtgatgacagcgtacaaatgacgaatgattctgaaatcaaatcacttctctctaagcaggttgacagaaaaccctcagctgataagaagtcagct |
218 |
Q |
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| T |
15366574 |
ggatagtgatgacagcgtacaaatgacgaatggttctgaaatcgaatcacttctctctaagcaggttgacagaaaaccctcagctgataagaagtcagct |
15366475 |
T |
|
| Q |
219 |
gtcaacgttaaacaagagaatgctcctaagaaaaaatctaatcaaaaagagaacacgaaaaaggttttagatgttcctggatctgcaaaaaggtgattcc |
318 |
Q |
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| T |
15366474 |
gtcaacgttaaacaagagaatgctcctaagaaaaaatctaatcaaaaagagaacacgaaaaaggttttagatgttcctggatctgcaaaaaggtgattcc |
15366375 |
T |
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| Q |
319 |
ctgtgcatcatagttggctttagcagtttactatgattttaattttgaatgcattgtgttcatttctcatgtatggttgattctggtgcaggttaaagat |
418 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15366374 |
ctgtgcatcatagttggcttcagcagtttactatgattttaattttgaatgcattgtgttcatttctcatgtatggttgattctggtgcaggttaaagat |
15366275 |
T |
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| Q |
419 |
taaggaaaaggctgtattaagtgatgttttctccaagtacggatcaaaagctgcctttgcttc |
481 |
Q |
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| T |
15366274 |
taaggaaaaggctgtattaagtgatgttttctccaagtacggatcaaaagctgcccttgcttc |
15366212 |
T |
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