View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9697_high_6 (Length: 293)
Name: NF9697_high_6
Description: NF9697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9697_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 21413279 - 21413545
Alignment:
| Q |
16 |
ttttcttctccatatatttcttaggaaaatgtcaaaaacttagtgaatcttaagcatatgataaagtttactagctggcaaattaagttattggatctga |
115 |
Q |
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| T |
21413279 |
ttttcttctccatatatttcttaggaaaatgtcaaaaacttagtgaatcttaagcatatgataaagtttactagctggcaaattaagtt-ttgaatctga |
21413377 |
T |
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| Q |
116 |
ataaaacaactttcaaacaacccatctgaccattacaacacgtctctcaaatctcaattggcaccttaatcatttgtaattaataatgatttggaataat |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21413378 |
ataaaacaactttcaaacaacccatctgaccattgcaacacgtctctcaaatctcaattggcaccttaatcatttgtaattaataatgatttggaataat |
21413477 |
T |
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| Q |
216 |
ggaatggtttccaaaataacccaatcttacaaatgaaattgatccatgtttcatgttcattgcctttg |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21413478 |
ggaatggtttccaaaataacccaatcttacaaatgaaattgatacatgtttcatgttcattgcctttg |
21413545 |
T |
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