View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9697_low_11 (Length: 243)

Name: NF9697_low_11
Description: NF9697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9697_low_11
NF9697_low_11
[»] chr2 (4 HSPs)
chr2 (25-198)||(4307400-4307579)
chr2 (197-232)||(33846199-33846234)
chr2 (25-82)||(27073291-27073347)
chr2 (29-82)||(27031570-27031622)
[»] chr1 (1 HSPs)
chr1 (84-192)||(33306250-33306355)
[»] chr3 (1 HSPs)
chr3 (84-161)||(18096364-18096435)
[»] scaffold0068 (1 HSPs)
scaffold0068 (197-235)||(5874-5912)
[»] chr5 (1 HSPs)
chr5 (197-235)||(21707998-21708036)
[»] chr4 (2 HSPs)
chr4 (197-235)||(46388408-46388446)
chr4 (197-235)||(48213014-48213052)


Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 4307579 - 4307400
Alignment:
Q  25 tgttaaagtgtgattagatattagcttaagacaattaattgtgtagcaagtaattgcata---------ctaactaactgttttgacggttatgaaagtt 115  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |         |||||||||| ||||||| |||||| |||||    
T  4307579 tgttaaagtttgattagatattagcttaagacaattacttgtgtaacaagtaattgcagagtctagtaactaactaactcttttgacagttatggaagtt 4307480  T
Q  116 acaatagttagttatagttaaataataactaactatagttaagcttgtgaggtacatagcatagtataaataagtgtatctca 198  Q
    |||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4307479 acaatagttagttatagttaaacaa---ctaactatagttaagcttgtgaggtacatagcatagtataaataagtgtatctca 4307400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 33846199 - 33846234
Alignment:
Q  197 catcagtcacttccttccatattttattattccttt 232  Q
    ||||||||||||||||||||||||||||||||||||    
T  33846199 catcagtcacttccttccatattttattattccttt 33846234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 27073291 - 27073347
Alignment:
Q  25 tgttaaagtgtgattagatattagcttaagacaattaattgtgtagcaagtaattgca 82  Q
    ||||||||||| ||||||||||| |||| |||||||| ||||||| ||||||||||||    
T  27073291 tgttaaagtgtaattagatattaactta-gacaattacttgtgtaacaagtaattgca 27073347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 27031622 - 27031570
Alignment:
Q  29 aaagtgtgattagatattagcttaagacaattaattgtgtagcaagtaattgca 82  Q
    ||||||| ||||||||||| |||| |||||||| ||||||| ||||||||||||    
T  27031622 aaagtgtaattagatattaactta-gacaattacttgtgtaacaagtaattgca 27031570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 33306250 - 33306355
Alignment:
Q  84 actaactaactgttttgacggttatgaaagttacaatagttagttatagttaaataataactaactatagttaagcttgtgaggtacatagcatagtata 183  Q
    ||||||||||||| ||||| |||||| | |||| |||| || ||||||||||||||   ||||||||||||||||| |||  ||||| ||| ||||||||    
T  33306250 actaactaactgtcttgacagttatggatgttataataattggttatagttaaata---actaactatagttaagcgtgttgggtacttagaatagtata 33306346  T
Q  184 aataagtgt 192  Q
    |||||||||    
T  33306347 aataagtgt 33306355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 18096435 - 18096364
Alignment:
Q  84 actaactaactgttttgacggttatgaaagttacaatagttagttatagttaaataataactaactatagttaagctt 161  Q
    ||||||||||||||||||| |||||| |||||||   |||||||||||||||   |||||||||||||||||||||||    
T  18096435 actaactaactgttttgactgttatggaagttac---agttagttatagtta---aataactaactatagttaagctt 18096364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 5874 - 5912
Alignment:
Q  197 catcagtcacttccttccatattttattattcctttgct 235  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  5874 catcagtcacttccttccagattttattattcctttgct 5912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 21708036 - 21707998
Alignment:
Q  197 catcagtcacttccttccatattttattattcctttgct 235  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  21708036 catcagtcacttccttccagattttattattcctttgct 21707998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 46388408 - 46388446
Alignment:
Q  197 catcagtcacttccttccatattttattattcctttgct 235  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  46388408 catcagtcacttccttccagattttattattcctttgct 46388446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 48213052 - 48213014
Alignment:
Q  197 catcagtcacttccttccatattttattattcctttgct 235  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  48213052 catcagtcacttccttccagattttattattcctttgct 48213014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University