View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9697_low_16 (Length: 224)
Name: NF9697_low_16
Description: NF9697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9697_low_16 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 26020982 - 26020754
Alignment:
| Q |
1 |
aattttaaatttacaaataaaatattcctctcaaaaatgtgattactacatgttaatttcatgtgcatcacaacgatcgcatgnnnnnnntgtatgtttt |
100 |
Q |
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| T |
26020982 |
aattttaaatttgcaagtaaaatattcctctcaaaaatgtgattcctacatgttaatttcatgtgcatcacaacgatcgcatgaaaaaaatgtatgtttt |
26020883 |
T |
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| Q |
101 |
tatcgaagtttatgatgcgtgtccatctacgaggaaacacacaaattgtacttgtgtaatat-----cacataacattagccaatttaagggtgaaatat |
195 |
Q |
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| T |
26020882 |
tatcgaagtttatgatgcgtgtccatctatgaggaaacacacggattgtatttgtgtaacataatgtcacttaacattggccaatttaagtgtgaaatat |
26020783 |
T |
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| Q |
196 |
aataatacaattttgtcaaacataaaaat |
224 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
26020782 |
aataatacaattttgtcaaacataaaaat |
26020754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 26229113 - 26229323
Alignment:
| Q |
24 |
attcctctcaaaaatgtgattactacatgttaatttcatgtgcatcacaacgatcgcatgnnnnnnnt-----gtatgtttttatcgaagtttatgatgc |
118 |
Q |
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|||||||| |||||||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||||||| | ||||||||| || |
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| T |
26229113 |
attcctctaaaaaatgtgattcctacatgttaatttcatatgcatcacaaggatcgcatgaagaaaaaaaaaagtatgtttttattggagtttatgacgc |
26229212 |
T |
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| Q |
119 |
gtgtccatctacgaggaaacacacaaattgtacttgtgtaatat-----cacataacattagccaatttaagggtgaaatataataatacaattttgtca |
213 |
Q |
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||||||||||| |||||||||||| |||| |||||||||| || ||||||||||| |||||||||| ||||||||| | ||||||||||| ||| |
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| T |
26229213 |
gtgtccatctatgaggaaacacacggattgcacttgtgtaacataatgtcacataacattggccaatttaaatgtgaaatatgacaatacaattttatca |
26229312 |
T |
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| Q |
214 |
aacataaaaat |
224 |
Q |
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||||||||||| |
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| T |
26229313 |
aacataaaaat |
26229323 |
T |
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Back To:
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