View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9697_low_5 (Length: 359)

Name: NF9697_low_5
Description: NF9697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9697_low_5
NF9697_low_5
[»] scaffold0006 (4 HSPs)
scaffold0006 (1-359)||(80143-80497)
scaffold0006 (8-358)||(128922-129267)
scaffold0006 (9-253)||(215328-215566)
scaffold0006 (307-359)||(215274-215326)
[»] chr1 (12 HSPs)
chr1 (8-193)||(19154875-19155063)
chr1 (234-359)||(13480248-13480373)
chr1 (8-157)||(13600460-13600610)
chr1 (93-238)||(13483827-13483976)
chr1 (266-359)||(14316681-14316774)
chr1 (266-359)||(13701263-13701356)
chr1 (264-359)||(13628205-13628300)
chr1 (24-78)||(16756897-16756951)
chr1 (8-50)||(13484023-13484065)
chr1 (8-50)||(13530524-13530566)
chr1 (14-50)||(13446862-13446898)
chr1 (14-50)||(13627800-13627836)
[»] chr6 (1 HSPs)
chr6 (218-359)||(22267322-22267474)


Alignment Details
Target: scaffold0006 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 80497 - 80143
Alignment:
Q  1 aaaactcaaaaaatacaccctatgaatttgaacaaagcaaagatgttaaaagtagattcgaacttaaaaataatgaaacctctagaaatagtaaaactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  80497 aaaactcaaaaaatacaccctatgaatttgaacaaagcaaagatgttaaaagtagattcgaacttaaaaataatgaaacctctagaaatagtaaaactga 80398  T
Q  101 aacatacctccaaaatacaaagccatatgataaacgcgagttgatgggttgggatccgaatttgcttaaaact---tagcaagaatttcacataaaccac 197  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  80397 aacatacctccaaaatacaaagccatatgataaatgcgagttgatgggttgggatccgaatttgcttaaaacttagtagcaagaatttcacataaaccac 80298  T
Q  198 aaaaactaacttttgaaaggcttactatcttcacttcacctcttttgggaacagaacacaaaccgtgttgcaactccaatgaggccatttgaatgcaaaa 297  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||| ||||||||     
T  80297 aaaaactaccttttgaaaggcttactatcttcccttcacctcttttgggaacagaacacaaaccg-------actccaatgaggccatttcaatgcaaag 80205  T
Q  298 ctgaagagcactatcgtcgtttcccttctgcacatgaccggtgatcaacgtctcatatatac 359  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  80204 ctgaagagcactatcgtcgtttcccttctgcacatgaccggtgttcaacgtctcatatatac 80143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 358
Target Start/End: Complemental strand, 129267 - 128922
Alignment:
Q  8 aaaaaatacaccctatgaatttgaacaaagcaaagatgttaaaagtagattcgaacttaaaaataatgaaacctctagaaatagtaaaactgaaacatac 107  Q
    ||||||||||||||| |||||||||| ||||||||||||||||  || ||| |||| ||||||||||   | |||||||||||| |||||||||||||||    
T  129267 aaaaaatacaccctacgaatttgaactaagcaaagatgttaaatttacatttgaacataaaaataatcgcaactctagaaatagaaaaactgaaacatac 129168  T
Q  108 ctccaaaatacaaagcca-tatgataaacgcgagttgatgggttgggatccgaatttgcttaaaacttag---caagaatttcacataaaccacaaaaac 203  Q
    |||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| || ||||   ||| |||||||||||||| ||          
T  129167 ctccaaaatacaaagccaatatgataaacgcgagctgatgggttaggatccgaatttgcttacaagttagtaacaacaatttcacataaactac------ 129074  T
Q  204 taacttttgaaaggcttactatcttcacttcacctcttttgggaacagaacacaaaccgtgttgcaactccaatgaggccatttgaatgcaaaactgaag 303  Q
       ||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||    
T  129073 ---cttttgaaaggctcactatctgcacttcacctcttttggaaacagaacacaaactgtgttgcaactccaatgatgccatttcaatgcaaagctgaag 128977  T
Q  304 agcactatcgtcgtttcccttctgcacatgaccggtgatcaacgtctcatatata 358  Q
    ||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||    
T  128976 agcactatcattgtttcccttctgcgcatgacaggtgatcaacgtctcatatata 128922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 215566 - 215328
Alignment:
Q  9 aaaaatacaccctatgaatttgaacaaagcaaagatgttaaaagtagattcgaacttaaaaataatgaaacctctagaaatagtaaaactgaaacatacc 108  Q
    |||||||||||||| |||||||||| ||||||||||||||||  || ||| |||| ||||||||||   | |||||||||||| |||||||||| |||||    
T  215566 aaaaatacaccctacgaatttgaactaagcaaagatgttaaatttacatttgaacataaaaataatcgcaactctagaaatagaaaaactgaaa-atacc 215468  T
Q  109 tccaaaatacaaagcc-atatgataaacgcgagttgatgggttgggatccgaatttgcttaaaacttag---caagaatttcacataaaccacaaaaact 204  Q
    |||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||| |||||||   ||| ||||||||||         |||||    
T  215467 tccaaaatacaaagccaatatgataaacgcgagctgatgggttaggatccgaatttgcttacaacttagtaacaacaatttcacat---------aaact 215377  T
Q  205 aacttttgaaaggcttactatcttcacttcacctcttttgggaacagaa 253  Q
    | |||||||||||||||||| || ||||||||||||||||| |||||||    
T  215376 accttttgaaaggcttactacctgcacttcacctcttttggaaacagaa 215328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 215326 - 215274
Alignment:
Q  307 actatcgtcgtttcccttctgcacatgaccggtgatcaacgtctcatatatac 359  Q
    |||||| | |||||||| |||| |||||| |||||||||||||||||||||||    
T  215326 actatcattgtttccctactgcgcatgacgggtgatcaacgtctcatatatac 215274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 19154875 - 19155063
Alignment:
Q  8 aaaaaatacaccctatgaatttgaacaaagcaaagatgttaaaagtagattcgaacttaaaaataatgaaacctctagaaatagtaaaactgaaacatac 107  Q
    ||||||||||||| | ||| |||||||||||||||||||||||  || |||||||| |||||||||||||||||||| |||||| |||||||||||||||    
T  19154875 aaaaaatacacccaacgaaattgaacaaagcaaagatgttaaatttacattcgaacataaaaataatgaaacctctataaatagaaaaactgaaacatac 19154974  T
Q  108 ctccaaaatacaaagccatatgataaacgcgagttgatgggttgggatccgaatttgcttaaaacttag---caagaatttcacataaa 193  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||   |||||||||||| ||||    
T  19154975 ctccaaaatacaaagccatatgataaacgcgagttgatgggttagaatccgaatttgcttaaaacttagtaacaagaatttcacgtaaa 19155063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 234 - 359
Target Start/End: Complemental strand, 13480373 - 13480248
Alignment:
Q  234 cacctcttttgggaacagaacacaaaccgtgttgcaactccaatgaggccatttgaatgcaaaactgaagagcactatcgtcgtttcccttctgcacatg 333  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||| || ||||||||||||||||| ||||||||||||| ||||    
T  13480373 cacctcttttgggaacagaacactaactgtgttgcaactccaatgatgccatttcaatgcgaagctgaagagcactatcgttgtttcccttctgcgcatg 13480274  T
Q  334 accggtgatcaacgtctcatatatac 359  Q
    ||||||||||||||||||||||||||    
T  13480273 accggtgatcaacgtctcatatatac 13480248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 13600610 - 13600460
Alignment:
Q  8 aaaaaatacaccctatgaatttgaacaaagcaaagatgttaaaagtagattcgaacttaaaaataatgaaacctctagaaatagtaaaactgaaacatac 107  Q
    ||||||||||||||| |||||||||| ||||||||||||||||  || ||| |||| ||||||||||   | |||||||||||| |||||||||||||||    
T  13600610 aaaaaatacaccctacgaatttgaactaagcaaagatgttaaatttacatttgaacataaaaataatcgcaactctagaaatagaaaaactgaaacatac 13600511  T
Q  108 ctccaaaatacaaagcc-atatgataaacgcgagttgatgggttgggatcc 157  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  13600510 ctccaaaatacaaagccaatatgataaacgcgagctgatgggttaggatcc 13600460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 238
Target Start/End: Complemental strand, 13483976 - 13483827
Alignment:
Q  93 aaaactgaaacatacctccaaaatacaaagccatatgataaacgcgagttgatgggttgggatccgaatttgcttaaaac---ttagcaagaattt-cac 188  Q
    |||||| ||||||||||||   ||||||||||| |||| |||||||||||||||| ||||||||| ||||||||||  ||   ||| ||| ||||| |||    
T  13483976 aaaacttaaacatacctccgttatacaaagccagatgacaaacgcgagttgatggtttgggatccaaatttgcttacgacttattaacaacaatttgcac 13483877  T
Q  189 ataaaccacaaaaactaacttttgaaaggcttactatcttcacttcacct 238  Q
     ||| |||||||||||  |||||||||||||||||||||||| |||||||    
T  13483876 gtaatccacaaaaactgccttttgaaaggcttactatcttcaattcacct 13483827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 266 - 359
Target Start/End: Complemental strand, 14316774 - 14316681
Alignment:
Q  266 tgcaactccaatgaggccatttgaatgcaaaactgaagagcactatcgtcgtttcccttctgcacatgaccggtgatcaacgtctcatatatac 359  Q
    ||||||| |||||||||||||| | ||| || |||||||||||| |||||||||||||||||||  ||| | | ||||||| ||||||||||||    
T  14316774 tgcaacttcaatgaggccatttcattgcgaagctgaagagcactttcgtcgtttcccttctgcatgtgatcagcgatcaacttctcatatatac 14316681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 13701263 - 13701356
Alignment:
Q  266 tgcaactccaatgaggccatttgaatgcaaaactgaagagcactatcgtcgtttcccttctgcacatgaccggtgatcaacgtctcatatatac 359  Q
    |||||||||||||||||||||| | ||| || ||||||||| || ||| ||||||||||| |||  ||||| |  |||||||||||||||||||    
T  13701263 tgcaactccaatgaggccatttcattgcgaagctgaagagccctttcgacgtttcccttcagcatgtgaccagcaatcaacgtctcatatatac 13701356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 359
Target Start/End: Original strand, 13628205 - 13628300
Alignment:
Q  264 gttgcaactccaatgaggccatttgaatgcaaaactgaagagcactatcgtcgtttcccttctgcacatgaccggtgatcaacgtctcatatatac 359  Q
    |||||||||||||||||||||||| | ||| ||  |||| ||| ||| |   ||||||||||||||| ||||  ||||||||||||||||||||||    
T  13628205 gttgcaactccaatgaggccatttcattgcgaagttgaaaagccctaacactgtttcccttctgcacgtgacaagtgatcaacgtctcatatatac 13628300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 16756897 - 16756951
Alignment:
Q  24 gaatttgaacaaagcaaagatgttaaaagtagattcgaacttaaaaataatgaaa 78  Q
    |||||||||||||||||||||||||||  || |||||||| ||||||||||||||    
T  16756897 gaatttgaacaaagcaaagatgttaaatttacattcgaacataaaaataatgaaa 16756951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 13484065 - 13484023
Alignment:
Q  8 aaaaaatacaccctatgaatttgaacaaagcaaagatgttaaa 50  Q
    |||||||||| |||| ||| |||||||||||||||||||||||    
T  13484065 aaaaaatacatcctacgaaattgaacaaagcaaagatgttaaa 13484023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 13530524 - 13530566
Alignment:
Q  8 aaaaaatacaccctatgaatttgaacaaagcaaagatgttaaa 50  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||    
T  13530524 aaaaagtacaccccatgaaattgaacaaagcaaagatgttaaa 13530566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 13446862 - 13446898
Alignment:
Q  14 tacaccctatgaatttgaacaaagcaaagatgttaaa 50  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  13446862 tacaccccatgaaattgaacaaagcaaagatgttaaa 13446898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 13627800 - 13627836
Alignment:
Q  14 tacaccctatgaatttgaacaaagcaaagatgttaaa 50  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  13627800 tacaccccatgaaattgaacaaagcaaagatgttaaa 13627836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 218 - 359
Target Start/End: Original strand, 22267322 - 22267474
Alignment:
Q  218 cttactatcttcacttcacctcttttgggaacagaacacaaaccgtgttgcaactccaatgaggccatttgaatgcaaaactga-----------agagc 306  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||  |||           |||||    
T  22267322 cttaccatcttcacttcacctcttttgggaatagaacacaaactgtgttgcaactccaatgatgccatttcaatgcaaagttgaagagtacaatcagagc 22267421  T
Q  307 actatcgtcgtttcccttctgcacatgaccggtgatcaacgtctcatatatac 359  Q
    |||||| | ||||||||||||| ||||||||||||||||||||||||||||||    
T  22267422 actatcattgtttcccttctgcgcatgaccggtgatcaacgtctcatatatac 22267474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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