View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9698_2 (Length: 894)
Name: NF9698_2
Description: NF9698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9698_2 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 280 - 753
Target Start/End: Original strand, 23385717 - 23386193
Alignment:
| Q |
280 |
atgctccaaatgtttagtcttagacgtgaggaagtacgtacgtgttaacattcccacattaacattgcatgaggtaagacatgaacatttgcttataagt |
379 |
Q |
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| T |
23385717 |
atgctccaaatgtttagtcttagacgtgaggaagtacgtacgtgttaacattcccacattcacattgtatgaggtaagacatgaacatttgcttataagt |
23385816 |
T |
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| Q |
380 |
ggagatagtctcagccttataaaccagttttctaaagatattaagttaagtcctactcaaattctaaaatgtttttatcaatgtctaatcaatttgacga |
479 |
Q |
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| T |
23385817 |
ggagagagtctcaaccttacaaaccagttttctaaagatattgagttaagtcctactcaaattctaaaatatttttatcaatgtctaatcaatttaacga |
23385916 |
T |
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| Q |
480 |
atcatagttttaatacataaacatattgaatacttgtaataagatgatatat---atgagtttgaactatggtatagctattgaactgcaaaatttggta |
576 |
Q |
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| T |
23385917 |
atcatagttttaatacataaacatattgaatacttgtaataagatgatatatataatgagtttgaactatggtatagctattgaactgcaaaatttggta |
23386016 |
T |
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| Q |
577 |
aggtcatacaaggtcaatacaaaataatttgaagaaaattgcggtcaaatgcaaatatagtataacattaatctggattatgtttcgatagtattatgtt |
676 |
Q |
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| T |
23386017 |
aggtcatacaaggtcaatacaaaataatttgaagaaaattgcggtcaaatgcaaatatagtataacattaatctggattatatttcgatagtattatgtt |
23386116 |
T |
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| Q |
677 |
tcaaataacatatcaaagattgaacatgtgagacttgttgatcaatcctcaattgattcaaccatgtttgaagtgga |
753 |
Q |
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| T |
23386117 |
tcaaataacatatcaaagattgaacatgtgagacttgttgatcaatcctcaattgattcaaccatgtttgaagtgga |
23386193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 60 - 243
Target Start/End: Original strand, 23385469 - 23385652
Alignment:
| Q |
60 |
gaacctgtgactttgaggagtaacacacacatttaagaagagagttaaggatgctttattttcatcactcactctaacattgatcttgaggaggagcact |
159 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23385469 |
gaacctgtgaccttgaggagtaacactcacatttaagaagagagttaaggatgctttattttcatcactcactctaacattgatcttgaggaggagcact |
23385568 |
T |
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| Q |
160 |
cacatttaagaatagagttaattatactttattttcaataaactttctagcactcacatttggatgatctccttcactattatg |
243 |
Q |
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| T |
23385569 |
cacatttaagaatagagttaagtatgctttattttcaatactctttctagcactcacatttggatgatctccttcactattatg |
23385652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 806 - 894
Target Start/End: Original strand, 23386246 - 23386334
Alignment:
| Q |
806 |
cgagcttgattctattctatatctcaattcaatccttttcaatgagaataaaatacaatcaaaataaaaccaatcaataaactaattaa |
894 |
Q |
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| T |
23386246 |
cgagcttgattctattctatatctcaattcaatcctgcccaatgagaataaaatacaatcaaaataaaaccaatcattaaactaattaa |
23386334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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