View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9698_3 (Length: 405)

Name: NF9698_3
Description: NF9698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9698_3
NF9698_3
[»] chr8 (9 HSPs)
chr8 (110-376)||(9624261-9624544)
chr8 (275-370)||(54218-54315)
chr8 (242-370)||(29610981-29611112)
chr8 (251-327)||(7591382-7591459)
chr8 (251-370)||(15001514-15001636)
chr8 (251-367)||(10932787-10932905)
chr8 (251-327)||(30501238-30501315)
chr8 (251-327)||(41548711-41548788)
chr8 (242-370)||(16595076-16595206)
[»] chr5 (3 HSPs)
chr5 (242-370)||(4689615-4689746)
chr5 (245-305)||(14011173-14011233)
chr5 (248-327)||(26180217-26180297)
[»] scaffold0025 (1 HSPs)
scaffold0025 (251-327)||(5365-5442)
[»] chr7 (2 HSPs)
chr7 (251-327)||(1363733-1363810)
chr7 (242-327)||(21408539-21408625)
[»] chr4 (8 HSPs)
chr4 (251-327)||(26083435-26083512)
chr4 (251-327)||(50178405-50178482)
chr4 (251-327)||(50729455-50729532)
chr4 (245-305)||(9807273-9807334)
chr4 (251-327)||(11056138-11056215)
chr4 (259-327)||(20517943-20518012)
chr4 (259-327)||(36497313-36497382)
chr4 (251-327)||(44640419-44640496)
[»] chr3 (4 HSPs)
chr3 (251-327)||(19906856-19906933)
chr3 (251-327)||(41682967-41683044)
chr3 (251-327)||(3867563-3867640)
chr3 (251-327)||(50386370-50386447)
[»] chr1 (5 HSPs)
chr1 (251-327)||(42512765-42512842)
chr1 (242-310)||(47242502-47242571)
chr1 (245-297)||(7146892-7146945)
chr1 (251-327)||(7837235-7837312)
chr1 (242-327)||(31574456-31574541)
[»] chr2 (3 HSPs)
chr2 (242-305)||(83385-83449)
chr2 (251-320)||(6896268-6896338)
chr2 (242-305)||(38623215-38623279)
[»] chr6 (6 HSPs)
chr6 (253-327)||(9614067-9614142)
chr6 (251-370)||(18597117-18597239)
chr6 (251-327)||(10485250-10485327)
chr6 (245-289)||(14925170-14925215)
chr6 (245-305)||(14925409-14925470)
chr6 (248-327)||(35004084-35004164)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 110 - 376
Target Start/End: Complemental strand, 9624544 - 9624261
Alignment:
Q  110 cggtctaactctatatcatgttaaaaagcacgattga----------aagaaaacaaattgagagaaagatgaattatttgagataagtcaaat------ 193  Q
    |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||| ||||||||||||||||||          
T  9624544 cggtctaactctatatcatgttaaaaagcacgattgagcccaactaaaagaaaacaaattgagagaaagatgaatcatttgagataagtcaaatgaaaaa 9624445  T
Q  194 -atgatacaattaggtgcgtttgatctgctnnnnnnntgaagaacatggcatgacatgacaacttcagttgtacactgtttgtttgtaaaattgtttctg 292  Q
     |||||||||||||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9624444 tatgatacaattaggtgcgtttgatctgctaaaaaaatgaagaacatgacatgacatgacaacttcagttgtacactgtttatttgtaaaattgtttctg 9624345  T
Q  293 ggacaagacaaacgggagacaagagacatgacaaacataaattttcgacccttgctaaaccataacacaactttttgtttcatg 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9624344 ggacaagacaaacgggagacaagagacatgacaaacataaattttcgacccttgctaaaccacaacacaactttttgtttcatg 9624261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 275 - 370
Target Start/End: Complemental strand, 54315 - 54218
Alignment:
Q  275 tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttcgacccttgctaaaccataacacaactttttgt 370  Q
    ||||||||| |||||||| |||| ||||| | ||| ||||| |||||||||||  |||||||||| | || ||||||||||| | |||||||||||||    
T  54315 tttgtaaaactgtttctgagacatgacaatccggacacaagggacatgacaaaaacataaatttttgtcctttgctaaaccacatcacaactttttgt 54218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 242 - 370
Target Start/End: Original strand, 29610981 - 29611112
Alignment:
Q  242 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacat--aaattttc 338  Q
    |||||||  |||||||||||||| || |||||| ||||||||| |||||| ||||||  |||||| |||| |||| |||| |||||| |   |||||||     
T  29610981 catgacagaacaacttcagttgtccaatgtttgatttgtaaaactgtttcagggacagaacaaactggaggcaagggacaggacaaaaactgaaattttt 29611080  T
Q  339 gacccttgctaaaccataacacaactttttgt 370  Q
    | |||| || |||||| |||||||||||||||    
T  29611081 gtccctcgccaaaccacaacacaactttttgt 29611112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 7591382 - 7591459
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  7591382 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaa 7591459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 370
Target Start/End: Complemental strand, 15001636 - 15001514
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgac--aaacataaattttcgacccttgc 347  Q
    |||||||||||||| || |||||| ||||||||| |||||| |||||| ||||||| |||| ||| |||||  ||  ||||  ||||||| | ||||  |    
T  15001636 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacaggacaaactggaggcaatagacagaacaaaaactgaaatttttgtccctcac 15001537  T
Q  348 taaaccataacacaactttttgt 370  Q
     |||||| |||||||||||||||    
T  15001536 caaaccacaacacaactttttgt 15001514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 367
Target Start/End: Complemental strand, 10932905 - 10932787
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaaca-taaattttcgacccttgct 348  Q
    |||||||||||||||   |||||| ||| ||||||||||| ||||||||||||||   ||| |||||||||||| ||| | |||| ||| | ||||  ||    
T  10932905 acaacttcagttgtatggtgtttgatttataaaattgtttatgggacaagacaaagtagaggcaagagacatgataaaaactaaaattttgtccctcact 10932806  T
Q  349 aaaccataacacaactttt 367  Q
    |||||| | ||||||||||    
T  10932805 aaaccacatcacaactttt 10932787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 30501315 - 30501238
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||||||||||  || |||||| ||||||||| |||||| || ||||||||||| |||| |||| |||| ||||||    
T  30501315 acaacttcagttgcccagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaggacaaa 30501238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 41548788 - 41548711
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||||||||||| || |||||| ||||||||| |||||| |  ||| ||||||| |||| ||||||||| ||||||    
T  41548788 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagatacatgacaaactggaggcaagagacaggacaaa 41548711  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 370
Target Start/End: Original strand, 16595076 - 16595206
Alignment:
Q  242 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgac--aaacataaattttc 338  Q
    ||||||| ||||||  |||||||| | |||||| |||||||| ||||||||||||||  |||||| | || |||| |||| |||  |||||| || |||     
T  16595076 catgacaggacaacaccagttgtatattgtttgatttgtaaa-ttgtttctgggacagaacaaactgtaggcaagggacaggacaaaaacatgaagtttt 16595174  T
Q  339 gacccttgctaaaccataacacaactttttgt 370  Q
    | |||| ||||| ||| |||||||||||||||    
T  16595175 gtccctcgctaatccacaacacaactttttgt 16595206  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 242 - 370
Target Start/End: Original strand, 4689615 - 4689746
Alignment:
Q  242 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttc 338  Q
    |||||||  |||||||||||||| || |||||| ||||||||| |||||| || ||||||||||| |||| |||| |||| ||||||  || | |||||     
T  4689615 catgacagaacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaggacaaaaacacatattttt 4689714  T
Q  339 gacccttgctaaaccataacacaactttttgt 370  Q
    | ||||  | |||||| |||||||||||||||    
T  4689715 gtccctcaccaaaccacaacacaactttttgt 4689746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 14011173 - 14011233
Alignment:
Q  245 gacatgacaacttcagttgtacactgtttgtttgtaaaattgtttctgggacaagacaaac 305  Q
    |||| |||||||||||||||||  |||||| |||| |||||||||  |||||| |||||||    
T  14011173 gacaggacaacttcagttgtactatgtttgattgtgaaattgttttagggacatgacaaac 14011233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 26180217 - 26180297
Alignment:
Q  248 atgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    ||||||||||||||| |||| | |||| ||||||||| ||||| ||||||| || |||  |||||||| ||| ||||||||    
T  26180217 atgacaacttcagttatacaatatttgatttgtaaaactgtttttgggacatgataaattggagacaaaagatatgacaaa 26180297  T

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Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 5365 - 5442
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||||||||||| |||| |||| |||| ||||||    
T  5365 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaggacaaa 5442  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 1363810 - 1363733
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||||||||||| || |||||| ||||||||||||||||  | ||| ||||||| |||| |||| |||||||||||    
T  1363810 acaacttcagttgtccagtgtttgatttgtaaaattgtttcatgtacaggacaaactggaggcaagggacatgacaaa 1363733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 327
Target Start/End: Original strand, 21408539 - 21408625
Alignment:
Q  242 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||||||||| ||  ||||||||| | |||| ||||||||  ||||| |||||||| |||||| |||| |||| |||||||||||    
T  21408539 catgacatgacatctctagttgtacaatatttgatttgtaaagctgtttttgggacaacacaaactggaggcaagggacatgacaaa 21408625  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 26083512 - 26083435
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    ||||||||||||||  | |||||| |||||||||||||||| ||||||  |||||| |||| |||| |||||||||||    
T  26083512 acaacttcagttgtttagtgtttgatttgtaaaattgtttcagggacagaacaaactggaggcaagggacatgacaaa 26083435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 50178405 - 50178482
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  50178405 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaa 50178482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 50729455 - 50729532
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||||||||||| || |||||| ||||||||| |||||| ||||||  |||||| |||| |||| |||||||||||    
T  50729455 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacagaacaaactggaggcaagggacatgacaaa 50729532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 9807334 - 9807273
Alignment:
Q  245 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 305  Q
    |||| ||||||||||||||| || |||||| ||||||||| |||||| || |||||||||||    
T  9807334 gacaggacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaagacaaac 9807273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 11056215 - 11056138
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| |||| |||| ||||||    
T  11056215 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagggacaagacaaa 11056138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 327
Target Start/End: Original strand, 20517943 - 20518012
Alignment:
Q  259 agttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||| || |||||| ||||||||| |||||| || ||||||||||| |||| ||||||||| ||||||    
T  20517943 agttgttcagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagagacaggacaaa 20518012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 327
Target Start/End: Complemental strand, 36497382 - 36497313
Alignment:
Q  259 agttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||| || |||||| ||||||||| |||||| || ||| ||||||| |||||||||||||| ||||||    
T  36497382 agttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggagacaagagacaggacaaa 36497313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 44640496 - 44640419
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    ||||||||||||||||| |||||| ||||||||| ||||| ||| | | |||||||  ||| ||||||||| ||||||    
T  44640496 acaacttcagttgtacagtgtttgatttgtaaaactgtttatggaaaatgacaaactagaggcaagagacaagacaaa 44640419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 19906933 - 19906856
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||||||||||| || |||||| |||||||||||||||| ||||||  |||||| |||| |||| |||| ||||||    
T  19906933 acaacttcagttgtccagtgtttgatttgtaaaattgtttcagggacagaacaaactggaggcaagggacaggacaaa 19906856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 41682967 - 41683044
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  41682967 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaagacaaa 41683044  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 3867563 - 3867640
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||| ||||||| |  |||||| ||||||||| |||||| ||||||  ||| || |||||||||||||||||||||    
T  3867563 acaactccagttgtccggtgtttgatttgtaaaactgtttcagggacagaacatactggagacaagagacatgacaaa 3867640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 50386370 - 50386447
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||| |||||||  | |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||||||||||    
T  50386370 acaactccagttgtctagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacatgacaaa 50386447  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 42512765 - 42512842
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  42512765 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaa 42512842  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 47242502 - 47242571
Alignment:
Q  242 catgacatgacaacttcagttgtacactgttt-gtttgtaaaattgtttctgggacaagacaaacgggag 310  Q
    ||||||||||||||||||||||||   |||||  ||||||||||||||| ||||||| ||||||| ||||    
T  47242502 catgacatgacaacttcagttgtatggtgtttaatttgtaaaattgtttatgggacatgacaaactggag 47242571  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 7146945 - 7146892
Alignment:
Q  245 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggaca 297  Q
    ||||| ||||||||||||||| | |||||| ||||||||||||||| |||||||    
T  7146945 gacataacaacttcagttgtatagtgtttgatttgtaaaattgtttttgggaca 7146892  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 7837312 - 7837235
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| |||||||  ||| |||| |||||||||||    
T  7837312 acaacttcagttgttcagtgtttgatttgtaaaactgtttcaggaacatgacaaactagaggcaagggacatgacaaa 7837235  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 327
Target Start/End: Complemental strand, 31574541 - 31574456
Alignment:
Q  242 catgacatgacaacttcagttgtacactgtttgtttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||||||||||||||||||||||| | ||  ||||||||| | ||||    |||| |||||| ||||| |||| ||||||||||    
T  31574541 catgacatgacaacttcagttgtacaattttgatttgtaaaactatttcaaaaacaaaacaaactggagataagaaacatgacaaa 31574456  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 83449 - 83385
Alignment:
Q  242 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 305  Q
    ||||||| |||||||||||||| ||| |||||| ||||||||| ||||| ||||||| |||||||    
T  83449 catgacaagacaacttcagttgcacagtgtttgatttgtaaaactgtttgtgggacatgacaaac 83385  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 6896338 - 6896268
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagaca 320  Q
    |||||||||||||| || |||||| ||||||||| |||||| ||||||| |||||| |||| |||| ||||    
T  6896338 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacaaaacaaactggaggcaagggaca 6896268  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 305
Target Start/End: Original strand, 38623215 - 38623279
Alignment:
Q  242 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 305  Q
    |||||||| |||||||||||| | || |||||| ||||||||| |||||| |||||| |||||||    
T  38623215 catgacataacaacttcagttatccaatgtttgatttgtaaaactgtttcagggacaggacaaac 38623279  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 327
Target Start/End: Complemental strand, 9614142 - 9614067
Alignment:
Q  253 aacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    ||||||||||||||| |||||| ||||||||| ||||||  ||||| || |||| |||| |||| |||||||||||    
T  9614142 aacttcagttgtacaatgtttgatttgtaaaactgtttcaaggacaggataaactggaggcaagggacatgacaaa 9614067  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 370
Target Start/End: Original strand, 18597117 - 18597239
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttcgacccttgc 347  Q
    |||| ||||||||| || |||||| ||||||||| |||||| |||| | ||||||| |||| |||| |||||||||||  |  ||||||| | ||||  |    
T  18597117 acaatttcagttgttcagtgtttgatttgtaaaactgtttcagggatatgacaaaccggaggcaagggacatgacaaaatctgaaatttttgtccctcac 18597216  T
Q  348 taaaccataacacaactttttgt 370  Q
     |||||| |||||||||||||||    
T  18597217 caaaccacaacacaactttttgt 18597239  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 10485327 - 10485250
Alignment:
Q  251 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    |||||| ||||||| || |||||| ||||||||||| |||| || ||| ||||||| |||| ||||||||| ||||||    
T  10485327 acaactccagttgtccagtgtttgatttgtaaaattatttcaggtacaggacaaactggaggcaagagacaggacaaa 10485250  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 14925170 - 14925215
Alignment:
Q  245 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgttt 289  Q
    |||||||||||||||||||| || |||||| |||||||||||||||    
T  14925170 gacatgacaacttcagttgtccagtgtttgatttgtaaaattgttt 14925215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 14925409 - 14925470
Alignment:
Q  245 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 305  Q
    |||||||||||||||||||| || |||||| ||||||||| |||||| || ||| |||||||    
T  14925409 gacatgacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaac 14925470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 35004084 - 35004164
Alignment:
Q  248 atgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 327  Q
    ||||||||| ||||||| |  |||||| |||||||||  |||| | |||||||| |||| |||||||||||||| ||||||    
T  35004084 atgacaactccagttgtgcggtgtttgatttgtaaaacggtttataggacaagataaaccggagacaagagacaagacaaa 35004164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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