View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9698_4 (Length: 312)
Name: NF9698_4
Description: NF9698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9698_4 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 57 - 283
Target Start/End: Complemental strand, 42639394 - 42639168
Alignment:
| Q |
57 |
gaagagattgatggtccatcaaaggactactgtgatgaaggcaacacagagtggccatgtgcccctaacaaaggttactatggtcgtggaccgattcaac |
156 |
Q |
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| T |
42639394 |
gaagagattgatggtccatcaaaggactactgtgatgaaggcaacacagagtggccatgtgcccctaacaaaggttactatggtcgtggaccgattcaac |
42639295 |
T |
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| Q |
157 |
tttcttggaactacaactatggaccagctggaagagacaatggttttgatggattgaactcacctgaaacagtggccaatgatcctacagtgtccttcaa |
256 |
Q |
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| T |
42639294 |
tatcttggaactacaactatggaccagctggaagagacaatggttttgatggattgaactcacctgaaacagtggccaatgatcctacagtgtccttcaa |
42639195 |
T |
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| Q |
257 |
gacagcattatggtattggatgaataa |
283 |
Q |
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| T |
42639194 |
gacagcattatggtattggatgaataa |
42639168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 56 - 281
Target Start/End: Complemental strand, 42634318 - 42634093
Alignment:
| Q |
56 |
agaagagattgatggtccatcaaaggactactgtgatgaaggcaacacagagtggccatgtgcccctaacaaaggttactatggtcgtggaccgattcaa |
155 |
Q |
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| T |
42634318 |
agaagagaaggatggtgcatcaaaggactactgcgatgaaagcaacacagagtacccgtgtgcccctaacaaaggatactatggccgtggaccgattcaa |
42634219 |
T |
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| Q |
156 |
ctttcttggaactacaactatggaccagctggaagagacaatggttttgatggattgaactcacctgaaacagtggccaatgatcctacagtgtccttca |
255 |
Q |
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| T |
42634218 |
ttatcttggaactttaattacggaccagctggaaaggacagtggttttgatgaattgaactctcctgaaacagtggccaatgatcctttagtgtccttca |
42634119 |
T |
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| Q |
256 |
agacagcattatggtattggatgaat |
281 |
Q |
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| T |
42634118 |
agacagcattatggtattggatgaat |
42634093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 155
Target Start/End: Complemental strand, 42628749 - 42628651
Alignment:
| Q |
57 |
gaagagattgatggtccatcaaaggactactgtgatgaaggcaacacagagtggccatgtgcccctaacaaaggttactatggtcgtggaccgattcaa |
155 |
Q |
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||||||||||||||| ||||| | ||||||||||||||| |||| |||||| ||||||||||||||||||| | ||||||| |||||||||||||| |
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| T |
42628749 |
gaagagattgatggtgcatcataagactactgtgatgaaagcaatgcagagtacacatgtgcccctaacaaagggttctatggttgtggaccgattcaa |
42628651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 42628638 - 42628588
Alignment:
| Q |
192 |
gacaatggttttgatggattgaactcacctgaaacagtggccaatgatcct |
242 |
Q |
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| T |
42628638 |
gacaatggttctgatggattgaactctcctgaaacagtggccaatgatcct |
42628588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 23385469 - 23385511
Alignment:
| Q |
21 |
gaacctgtgactttgaggagtaacacacacatttaagaagaga |
63 |
Q |
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| T |
23385469 |
gaacctgtgaccttgaggagtaacactcacatttaagaagaga |
23385511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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