View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9698_low_1 (Length: 1030)
Name: NF9698_low_1
Description: NF9698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9698_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 347 - 820
Target Start/End: Complemental strand, 23386193 - 23385717
Alignment:
| Q |
347 |
tccacttcaaacatggttgaatcaattgaggattgatcaacaagtctcacatgttcaatctttgatatgttatttgaaacataatactatcgaaacataa |
446 |
Q |
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| T |
23386193 |
tccacttcaaacatggttgaatcaattgaggattgatcaacaagtctcacatgttcaatctttgatatgttatttgaaacataatactatcgaaatataa |
23386094 |
T |
|
| Q |
447 |
tccagattaatgttatactatatttgcatttgaccgcaattttcttcaaattattttgtattgaccttgtatgaccttaccaaattttgcagttcaatag |
546 |
Q |
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| T |
23386093 |
tccagattaatgttatactatatttgcatttgaccgcaattttcttcaaattattttgtattgaccttgtatgaccttaccaaattttgcagttcaatag |
23385994 |
T |
|
| Q |
547 |
ctataccatagttcaaactcat---atatatcatcttattacaagtattcaatatgtttatgtattaaaactatgattcgtcaaattgattagacattga |
643 |
Q |
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| T |
23385993 |
ctataccatagttcaaactcattatatatatcatcttattacaagtattcaatatgtttatgtattaaaactatgattcgttaaattgattagacattga |
23385894 |
T |
|
| Q |
644 |
taaaaacattttagaatttgagtaggacttaacttaatatctttagaaaactggtttataaggctgagactatctccacttataagcaaatgttcatgtc |
743 |
Q |
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| T |
23385893 |
taaaaatattttagaatttgagtaggacttaactcaatatctttagaaaactggtttgtaaggttgagactctctccacttataagcaaatgttcatgtc |
23385794 |
T |
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| Q |
744 |
ttacctcatgcaatgttaatgtgggaatgttaacacgtacgtacttcctcacgtctaagactaaacatttggagcat |
820 |
Q |
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| T |
23385793 |
ttacctcatacaatgtgaatgtgggaatgttaacacgtacgtacttcctcacgtctaagactaaacatttggagcat |
23385717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 36 - 294
Target Start/End: Complemental strand, 23386505 - 23386246
Alignment:
| Q |
36 |
cccacctttacaaaattagaagtccacttcttttccactaagaaacacaatttagaaaaaa-ggtccacaactatgatatggacagtgatgccaaaatct |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
23386505 |
cccacctttacaaaattagaagtccacttcttttccactaataaacacaatttagaaaaaaaggtccacaactatgatatggacagtgatgctaaaatct |
23386406 |
T |
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| Q |
135 |
ttgatgtttttgggattagtgttttaaaaatcagaccgaaccgattggtgttctattcatttaactgaaaattaattagtttattgattggttttatttt |
234 |
Q |
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| T |
23386405 |
ttgatgtttttgggactaatgttttaaaaatcagaccgaaccgatcggtgttctattcatttaactaaaaattaattagtttaatgattggttttatttt |
23386306 |
T |
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| Q |
235 |
gattgtattttattctcattgaaaaggattgaattgagatatagaatagaatcaagctcg |
294 |
Q |
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| T |
23386305 |
gattgtattttattctcattgggcaggattgaattgagatatagaatagaatcaagctcg |
23386246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 857 - 1029
Target Start/End: Complemental strand, 23385652 - 23385480
Alignment:
| Q |
857 |
cataatagtgaaggagatcatccaaatgtgagtgctagaaagtttattgaaaataaagtataattaactctattcttaaatgtgagtgctcctcctcaag |
956 |
Q |
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| T |
23385652 |
cataatagtgaaggagatcatccaaatgtgagtgctagaaagagtattgaaaataaagcatacttaactctattcttaaatgtgagtgctcctcctcaag |
23385553 |
T |
|
| Q |
957 |
atcaatgttagagtgagtgatgaaaataaagcatccttaactctcttcttaaatgtctgtgctcctcctcaag |
1029 |
Q |
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| T |
23385552 |
atcaatgttagagtgagtgatgaaaataaagcatccttaactctcttcttaaatgtgagtgttactcctcaag |
23385480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 977 - 1030
Target Start/End: Complemental strand, 23385605 - 23385552
Alignment:
| Q |
977 |
tgaaaataaagcatccttaactctcttcttaaatgtctgtgctcctcctcaaga |
1030 |
Q |
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|||||||||||||| ||||||||| ||||||||||| |||||||||||||||| |
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| T |
23385605 |
tgaaaataaagcatacttaactctattcttaaatgtgagtgctcctcctcaaga |
23385552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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