View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9699_high_1 (Length: 475)
Name: NF9699_high_1
Description: NF9699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9699_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 792844 - 793302
Alignment:
| Q |
1 |
tcccaaactaatgcatttattttgggggaagaaaagggaagatcaaaagtcaagtgttttgattgtaaaagcaattttaattttttgttttgcgaaatct |
100 |
Q |
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| T |
792844 |
tcccaaaataatgcatttatttagggggaagaaaagggaaaatcaaaagtcaagtgttttgattgtaaaagcaattttaattttttgttttgcgaaatct |
792943 |
T |
|
| Q |
101 |
ctgttacataaagggaatgacacacggcatgagaaaaggataaaacagttgcattttaaaacttccttctacttatatactacaataagctaattcttca |
200 |
Q |
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| T |
792944 |
ctgttacataaagggaatgacacacggcatgagaaaaggataaaacagttgcattttaaaacttccttctacttatatactacaataagctaattcttca |
793043 |
T |
|
| Q |
201 |
tatttgaactaatataccaaatctaaacttcaattggataagttcaagcttatgatcatgaaaagtcctctaccaaattacttttcattcttaaacctct |
300 |
Q |
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| T |
793044 |
tatttgaactaatataccaaatctaaacttcaattggttaagttcaagcttatgatcatgaaaagttttctaccaaattacttttcattcttaaacctct |
793143 |
T |
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| Q |
301 |
cttccatatccaaatgttccatctctgtgacacaatcaattgcagtgatatcattgattctcatattactttacatttgtttcagatccactagtgtcta |
400 |
Q |
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| T |
793144 |
cttccatatccaaatgttccatctctgtgacacaatcaattgcagtgatatcattgattctcatattactttacatttgtttcagatccactagtgtcta |
793243 |
T |
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| Q |
401 |
ccttattgactatgtttgttatttacctcctgacaatttgagactccctcactcccatt |
459 |
Q |
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| T |
793244 |
ccttattgactatgtttgttatttacctcctgacaatttgagactccctcactcccatt |
793302 |
T |
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