View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9699_high_3 (Length: 308)
Name: NF9699_high_3
Description: NF9699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9699_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 14267009 - 14266715
Alignment:
| Q |
1 |
ttgatatgtgtttttatgtgtatgtgtaaagtgatgtgctaaatacttgtgacaatgtaagattttctgaataaagtatggtaaagaataatgag-gttt |
99 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14267009 |
ttgatatgtgtttttatgtgtaagtgtaaagtgatgtgctaaatacttgtgacaatgtaagattttctgaataaagtatggtaaagaataatgagtgttt |
14266910 |
T |
|
| Q |
100 |
tacactaaaacattcatcactcttaattttttcgttgatatctttctttatgatgctatagtcaagtttgagtatttgagtcaataactcctgcaatcta |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14266909 |
aacactaaaacattcatcactcttaattttttcgttgatatctttctttatgatgctatagtcaagtttgagtatttgagtcaataactcctgcaatcta |
14266810 |
T |
|
| Q |
200 |
ttttaaagtttataaagtcaagttcttgccactaaaatttcatgaacacatt-cgttgtattcgatgctaaaacgaagaaatatttctacatttt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14266809 |
ttttaaagtttataaagtcaagttcttgccactaaaatttcatgaacacattccgttgtattcgatgctaaaacgaagaaatatttctacatttt |
14266715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University