View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9699_low_1 (Length: 594)
Name: NF9699_low_1
Description: NF9699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9699_low_1 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 6 - 594
Target Start/End: Complemental strand, 3003599 - 3003010
Alignment:
| Q |
6 |
aatgtctacaataagaaataatagcactaaactcgatacatcttccttaatagattgaaggttgtctaccattcgctcagggtcaagctcaaaagttgct |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3003599 |
aatgtctacaataagaaataatagcactaaactcgagacatcttccttaatagattgaaggttgtctaccattcgctcagggtcaagctcaaaagttgct |
3003500 |
T |
|
| Q |
106 |
ccatctaactgcaaatggtgcacctaccagacagcggaaagaaggccacaagcttcaccttcattaatgaaacaaatggaagagtgacactccgttctag |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3003499 |
ccatctaactgcaaatggtgcacctaccagacagcggaaagaaggccacaagcttcaccttcattaatgaaacaaatggaagagtgacactccgttctag |
3003400 |
T |
|
| Q |
206 |
caagcacaaagcgtccaaacttggcgtgtctggnnnnnnnccctgcactgctgtcgaacctgcactgatgtaccgctgc-cctgcaccagctttgaaata |
304 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3003399 |
caagcacaaagcgtccaaacttggcgtatctggtttttttccctgcactgctgtcgaacctgcactgatgtaccgctgcacctgcaccagctttgaaata |
3003300 |
T |
|
| Q |
305 |
actgctcagcgcgccaaaaaatatgctgctattgttaacaaacattctcctagatgcggatatcacgacttttccaaatactccaaataataaccgcaaa |
404 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3003299 |
actactcagcgcgccaaaaaatatgctgctgttgttaacaaacattctcctagatgcggatatcacgacttttccgaatactccaaataataaccgcaaa |
3003200 |
T |
|
| Q |
405 |
gagacactatgtcggagataaaatatcgtaatgcagtaaaaactcatctgctttacatttgttcttaactgctgtaaaatacccaatatttcatttcaca |
504 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3003199 |
gagacactatgtcggagataaaatatcataatgcagtaaaaactcatctgctttacatttgttcttaactgctgtaaaatacccaatatttcatttcaca |
3003100 |
T |
|
| Q |
505 |
aatcaccattttgcaacaggtcatactccctggcccctgcacattgaaaaaacaagtaaaacacatattcacccgattcttcataaaaaa |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3003099 |
aatcaccattttgcaacaggtcatactccctggcccctgcacattgaaaaaacaagtaaaaaacatattcacccgattcttcataaaaaa |
3003010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University