View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9699_low_10 (Length: 250)
Name: NF9699_low_10
Description: NF9699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9699_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 6012103 - 6012218
Alignment:
| Q |
114 |
ggctttcaatggtggtcctctgcacctttacatattagagaagacttagttaagaataggctaggtcttccattctatagattttcctaacattttgagg |
213 |
Q |
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| T |
6012103 |
ggctttcaatggtggtcctctgcacctttacaaattagagaagacttagttaagaataggctaggtcttcgattctatagattttcctaacattttgagg |
6012202 |
T |
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| Q |
214 |
gtttggtttggtcccc |
229 |
Q |
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| T |
6012203 |
gtttggtttggtcccc |
6012218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6012039 - 6012104
Alignment:
| Q |
1 |
aatggcttaattgtctcactttactaaaatctatgaactttttgttatctcatattttcagagagg |
66 |
Q |
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| T |
6012039 |
aatggcttaattgtctcactttactgaaatctatgaactttttgttatctcatattttcagagagg |
6012104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 28462794 - 28462680
Alignment:
| Q |
113 |
tggctttcaatggtggtcctctgcacctttacatattagagaagacttagttaagaataggctaggtcttccattctatagattttcctaacattttgag |
212 |
Q |
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| T |
28462794 |
tggctttcaatggtggtcctctgcacctttg---attagagaagacttagttaaaaataggctaggttttccattctatagattttcctaatatttagag |
28462698 |
T |
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| Q |
213 |
ggtttggtttggtccccc |
230 |
Q |
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| T |
28462697 |
agtttggttttgtccccc |
28462680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 7232104 - 7232309
Alignment:
| Q |
7 |
ttaattgtctcactttactaaaatctatgaactttttgttatctcatattttcagagagggtaatcactgtgcatataagctagctgcactaggtagtac |
106 |
Q |
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| T |
7232104 |
ttaattgtcttactttagtgaaatctatgaactttttgttatctcacatcttcagagagggcaatcactgtacatatatgttagttgca----------- |
7232192 |
T |
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| Q |
107 |
tcataatggctttcaatggtggtcctctgcacctttacatattagagaagacttagttaagaataggctaggtcttccattctatagattttcctaacat |
206 |
Q |
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|||| ||||||||| ||||||| | || || | || |||||||| || |||||||||||||||||||||||||||| ||||| ||||||| |||| |
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| T |
7232193 |
----aatgcctttcaatgatggtcctttccagctatgcagattagagatgatttagttaagaataggctaggtcttccatattatag-ttttccttacat |
7232287 |
T |
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| Q |
207 |
tttgagggtttggtttggtccc |
228 |
Q |
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||||||| ||||||| ||||| |
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| T |
7232288 |
attgaggggttggttttgtccc |
7232309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 48949262 - 48949323
Alignment:
| Q |
159 |
ttagttaagaataggctaggtcttccattctatagattttcctaacattttgagggtttggt |
220 |
Q |
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|||| ||||||||| |||||| ||| || |||||||| || |||||||||||||||||||| |
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| T |
48949262 |
ttagctaagaatagactaggttttctatgttatagattgtcttaacattttgagggtttggt |
48949323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 4718285 - 4718212
Alignment:
| Q |
147 |
attagagaagacttagttaagaataggctaggtcttccattctatagattttcctaacattttgagggtttggt |
220 |
Q |
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||||| ||||| || |||||| |||| |||||||||| || |||||||| || |||||||||||||||||||| |
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| T |
4718285 |
attagtgaagatttggttaagtatagactaggtcttctatgttatagattgtcttaacattttgagggtttggt |
4718212 |
T |
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