View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9699_low_11 (Length: 248)

Name: NF9699_low_11
Description: NF9699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9699_low_11
NF9699_low_11
[»] chr1 (10 HSPs)
chr1 (1-239)||(14522305-14522543)
chr1 (1-239)||(15011193-15011431)
chr1 (1-239)||(15002300-15002538)
chr1 (1-239)||(14532426-14532664)
chr1 (1-239)||(15037213-15037450)
chr1 (1-235)||(15017312-15017546)
chr1 (1-239)||(15032651-15032883)
chr1 (149-239)||(15040937-15041029)
chr1 (1-173)||(14504241-14504413)
chr1 (1-173)||(14468062-14468234)
[»] scaffold0400 (2 HSPs)
scaffold0400 (1-239)||(12972-13219)
scaffold0400 (1-239)||(6684-6919)
[»] scaffold0365 (2 HSPs)
scaffold0365 (1-239)||(13615-13862)
scaffold0365 (1-239)||(7328-7563)
[»] chr7 (1 HSPs)
chr7 (191-238)||(16025269-16025316)
[»] chr8 (2 HSPs)
chr8 (1-73)||(17027248-17027320)
chr8 (1-73)||(17557740-17557812)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-128; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 14522305 - 14522543
Alignment:
Q  1 caaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcgacaaaattggtatgagatcccata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14522305 caaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcaacaaaattggtatgagatcccata 14522404  T
Q  101 aacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatgactatggaagtttctacctgatgttgag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14522405 aacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatgactatggaagtttccacctgatgttgag 14522504  T
Q  201 caaggctctaggccagagacattaccgcacaagcctttg 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14522505 caaggctctaggccagagacattaccgcacaagcctttg 14522543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 15011431 - 15011193
Alignment:
Q  1 caaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcgacaaaattggtatgagatcccata 100  Q
    ||||||||||||||  ||||||||||||| |||||||||||| |||| |||||| |||||||||||||||||| ||||| ||  ||||||||||||||||    
T  15011431 caaagctccatatttcaaatagattttcaatttgaaattcttgtacaggcttgtattcttttgtgcttgaagttcgacacaaaaggtatgagatcccata 15011332  T
Q  101 aacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatgactatggaagtttctacctgatgttgag 200  Q
    ||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||| ||||||  ||| || || | ||| |||||||||    
T  15011331 aacaattaatgctaacagtagagggcctagagtgagggatagaactagcaccaaaattttgttagtcttatgataatgaaatttgccaccagatgttgag 15011232  T
Q  201 caaggctctaggccagagacattaccgcacaagcctttg 239  Q
    |||||||||||||||||||||||||| || |||||||||    
T  15011231 caaggctctaggccagagacattaccacataagcctttg 15011193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 15002538 - 15002300
Alignment:
Q  1 caaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcgacaaaattggtatgagatcccata 100  Q
    ||||||||||||||  ||||||||||||| |||  ||||||| | || |||||| |||||||||||||||||| ||||||||  ||||||||||||||||    
T  15002538 caaagctccatatttcaaatagattttcaattttcaattcttgtgcaggcttgtattcttttgtgcttgaagttcgacaaaaaaggtatgagatcccata 15002439  T
Q  101 aacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatgactatggaagtttctacctgatgttgag 200  Q
    |||||  ||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| | | ||| |||||||||    
T  15002438 aacaatcaatgctaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttagtattatgactatgaaaggtgccacccgatgttgag 15002339  T
Q  201 caaggctctaggccagagacattaccgcacaagcctttg 239  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  15002338 caaggctctaggccagaaacattaccacacaagcctttg 15002300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 14532426 - 14532664
Alignment:
Q  1 caaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcgacaaaattggtatgagatcccata 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||| | || |||||||||||||||||||||||  |||||||  ||||||||||||| ||    
T  14532426 caaagctccatattgcaaatagattttcagtttgaaattcttctgcgtggttgtcttcttttgtgcttgaagtttgacaaaaaaggtatgagatcccgta 14532525  T
Q  101 aacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatgactatggaagtttctacctgatgttgag 200  Q
    | |||| ||||| ||||||| ||  ||||||||||||| |||||||||||||||||| ||| |||| ||||||||||| ||||| | |||||||||||||    
T  14532526 agcaaaaaatgccaacaatagagtacctagagtgaggggtaaaactagcaccaaaatattgctagtcttatgactatgaaagttgccacctgatgttgag 14532625  T
Q  201 caaggctctaggccagagacattaccgcacaagcctttg 239  Q
    |||  | ||||||||||||||||||| ||||||||||||    
T  14532626 caacacactaggccagagacattaccacacaagcctttg 14532664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 15037450 - 15037213
Alignment:
Q  1 caaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcgacaaaattggtatgagatcccata 100  Q
    ||||||||||||||  ||||||||||||| |||||||||||| | |  |||||| |||||||||||||||||| |||||||   ||||||||||||||||    
T  15037450 caaagctccatatttcaaatagattttcaatttgaaattcttgtgctggcttgtgttcttttgtgcttgaagttcgacaaaga-ggtatgagatcccata 15037352  T
Q  101 aacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatgactatggaagtttctacctgatgttgag 200  Q
    |||||  ||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| | | ||| |||||||||    
T  15037351 aacaatcaatgctaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttagtattatgactatgaaaggtgccacccgatgttgag 15037252  T
Q  201 caaggctctaggccagagacattaccgcacaagcctttg 239  Q
    |||||||||||||||||||||||||| || |||||||||    
T  15037251 caaggctctaggccagagacattaccacataagcctttg 15037213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 15017546 - 15017312
Alignment:
Q  1 caaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcgacaaaattggtatgagatcccata 100  Q
    ||||||||||||||  ||||||||||||| |||||||||||| | || |||||| ||||| |||||||||||| ||||||||   |||||||||||||||    
T  15017546 caaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttctgtgcttgaagttcgacaaaaaaagtatgagatcccata 15017447  T
Q  101 aacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatgactatggaagtttctacctgatgttgag 200  Q
    ||||| ||||||||||| || ||| ||||||||||| |||| |||||||||| |||||||||| || |||||| |||| || || | ||| ||| |||||    
T  15017446 aacaattaatgctaacagtagaggacctagagtgagtgatagaactagcacccaaattttgtttgtcttatgattatgaaacttgccaccagatattgag 15017347  T
Q  201 caaggctctaggccagagacattaccgcacaagcc 235  Q
    ||||||||||||||||||| |||||| ||||||||    
T  15017346 caaggctctaggccagagatattaccacacaagcc 15017312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 15032883 - 15032651
Alignment:
Q  1 caaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcgacaaaattggtatgagatcccata 100  Q
    ||||||||||||||  ||| ||||||||| |||||||||||| | || |||||| |||||||| ||||||| | ||||| ||  |||||||||||         
T  15032883 caaagctccatatttcaaacagattttcaatttgaaattcttgtgcaggcttgtattcttttgcgcttgaaattcgacacaaaaggtatgagatc----- 15032789  T
Q  101 aacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatgactatggaagtttctacctgatgttgag 200  Q
     |||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| || || | ||| |||||||||    
T  15032788 -acaattaatgctaacagtagagggcctagagtgagggatagaactagcaccaaaattttgttagtcttatgattatgaaatttgccaccagatgttgag 15032690  T
Q  201 caaggctctaggccagagacattaccgcacaagcctttg 239  Q
    |||||||||||||||||||||||||| || |||||||||    
T  15032689 caaggctctaggccagagacattaccacataagcctttg 15032651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 15041029 - 15040937
Alignment:
Q  149 caccaaaattttgttagttttatga--ctatggaagtttctacctgatgttgagcaaggctctaggccagagacattaccgcacaagcctttg 239  Q
    |||||||||| ||||||| ||||||  ||||| ||||| | ||| |||||||||||| |||||||||||||||||||||| ||||||||||||    
T  15041029 caccaaaattgtgttagtattatgagactatgaaagttgccaccagatgttgagcaatgctctaggccagagacattaccacacaagcctttg 15040937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 14504413 - 14504241
Alignment:
Q  1 caaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcgacaaaattggtatgagatcccata 100  Q
    |||| |||||||||| ||||||||||||||| ||  |||||||| ||  ||||  |||||||||| | ||||| ||| | |  |  || |||||||||||    
T  14504413 caaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttgtgttcgaagttcgaaatagataataggagatcccata 14504314  T
Q  101 aacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatga 173  Q
    | |||||||||||||||| |||  ||||||||||| || ||||| || ||||||  |||||||||| ||||||    
T  14504313 accaaataatgctaacaaaaaaatgcctagagtgatgggtaaaattaccaccaattttttgttagtcttatga 14504241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 14468234 - 14468062
Alignment:
Q  1 caaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcgacaaaattggtatgagatcccata 100  Q
    |||| |||||||||| ||||||||||||||| ||  |||||||| ||  ||||  ||||||| || | ||||| ||| | |  |  || |||||||||||    
T  14468234 caaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttctgttcgaagttcgaaatagataataggagatcccata 14468135  T
Q  101 aacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatga 173  Q
    | |||||||||||||||| |||  ||||||||||| || ||||| || ||||||  |||||||||| ||||||    
T  14468134 accaaataatgctaacaaaaaaatgcctagagtgatgggtaaaattaccaccaattttttgttagtcttatga 14468062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 13219 - 12972
Alignment:
Q  1 caaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcgacaaaattggtatgagatcccata 100  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||||  | |||||| ||||||| | ||||||||| |  | ||  ||||||||| ||||||    
T  13219 caaagctccatgttgcaaagagattttcagtttgaaattcttctgtaggcttgtattctttttttcttgaagtgtggtagaaaaggtatgagaacccata 13120  T
Q  101 aacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatgac---------tatggaagtttctacct 191  Q
    |||||||||||||||||||| ||  || |||||||||| |||||||||  |||||||||||||||| |||||||         |||| ||||||| ||||    
T  13119 aacaaataatgctaacaatagagttccaagagtgaggggtaaaactagatccaaaattttgttagtcttatgactatgaaagttatgaaagtttccacct 13020  T
Q  192 gatgttgagcaaggctctaggccagagacattaccgcacaagcctttg 239  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||    
T  13019 gatgttgagcaaggctctagaccagagacattaccacacaagcctttg 12972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 6919 - 6684
Alignment:
Q  1 caaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcgacaaaattggtatgagatcccata 100  Q
    ||||||||||||||| ||||||||||||||||||||||||| || ||  ||||| |||||||||||||||||| ||||| ||  || ||||||  |||||    
T  6919 caaagctccatattgcaaatagattttcagtttgaaattctcctgcagtcttgtattcttttgtgcttgaagttcgacataaaaggcatgagaggccata 6820  T
Q  101 aacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatgactatggaagtttctacctgatgttgag 200  Q
    || |||||||||| |||||| || ||||||||||| || |||||| | ||||||||| |  ||||| ||||||||||| ||||| | |||| ||||||||    
T  6819 aagaaataatgctgacaatagagtgcctagagtgatgggtaaaacaaccaccaaaatgtgtttagtcttatgactatgaaagttaccacctaatgttgag 6720  T
Q  201 caaggctctaggccagagacattaccgcacaagcctttg 239  Q
    |||||||||| |||||||   ||||| ||||||||||||    
T  6719 caaggctctaagccagag---ttaccacacaagcctttg 6684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 13862 - 13615
Alignment:
Q  1 caaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcgacaaaattggtatgagatcccata 100  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||||  | |||||| ||||||| | ||||||||| |  | ||  ||||||||| ||||||    
T  13862 caaagctccatgttgcaaagagattttcagtttgaaattcttctgtaggcttgtattctttttttcttgaagtgtggtagaaaaggtatgagaacccata 13763  T
Q  101 aacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatgac---------tatggaagtttctacct 191  Q
    |||||||||||||||||||| ||  || |||||||||| |||||||||  |||||||||||||||| |||||||         |||| ||||||| ||||    
T  13762 aacaaataatgctaacaatagagttccaagagtgaggggtaaaactagatccaaaattttgttagtcttatgactatgaaagttatgaaagtttccacct 13663  T
Q  192 gatgttgagcaaggctctaggccagagacattaccgcacaagcctttg 239  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||    
T  13662 gatgttgagcaaggctctagaccagagacattaccacacaagcctttg 13615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 7563 - 7328
Alignment:
Q  1 caaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcgacaaaattggtatgagatcccata 100  Q
    ||||||||||||||| ||||||||||||||||||||||||| || ||  ||||| |||||||||||||||||| ||||| ||  || ||||||  |||||    
T  7563 caaagctccatattgcaaatagattttcagtttgaaattctcctgcagtcttgtattcttttgtgcttgaagttcgacataaaaggcatgagaggccata 7464  T
Q  101 aacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatgactatggaagtttctacctgatgttgag 200  Q
    || |||||||||| |||||| || ||||||||||| || |||||| | ||||||||| |  ||||| ||||||||||| ||||| | |||| ||||||||    
T  7463 aagaaataatgctgacaatagagtgcctagagtgatgggtaaaacaaccaccaaaatgtgtttagtcttatgactatgaaagttaccacctaatgttgag 7364  T
Q  201 caaggctctaggccagagacattaccgcacaagcctttg 239  Q
    |||||||||| |||||||   ||||| ||||||||||||    
T  7363 caaggctctaagccagag---ttaccacacaagcctttg 7328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 16025316 - 16025269
Alignment:
Q  191 tgatgttgagcaaggctctaggccagagacattaccgcacaagccttt 238  Q
    |||||||| ||| ||||||| ||||||||||||||| |||||||||||    
T  16025316 tgatgttgggcagggctctaagccagagacattaccacacaagccttt 16025269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17027320 - 17027248
Alignment:
Q  1 caaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagt 73  Q
    |||||||||||| || ||||||||| ||||||||||||| ||||    |||||| |||||||||  |||||||    
T  17027320 caaagctccatactgcaaatagattatcagtttgaaattattctgtcggcttgtattcttttgtcattgaagt 17027248  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17557812 - 17557740
Alignment:
Q  1 caaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagt 73  Q
    |||||||||||| || ||||||||| ||||||||||||| ||||    |||||| |||||||||  |||||||    
T  17557812 caaagctccatactgcaaatagattatcagtttgaaattattctgtcggcttgtattcttttgtcattgaagt 17557740  T

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