View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9699_low_14 (Length: 228)
Name: NF9699_low_14
Description: NF9699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9699_low_14 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 56168519 - 56168746
Alignment:
| Q |
1 |
tcacaggatcagagggagattagtcttgaaggatttaggaccaagagatataatgtgcttgttgcaaccgatgttgctggacgtggtattgacattcctg |
100 |
Q |
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| T |
56168519 |
tcacaagatcagagggagattagtcttgaaggatttaggaccaagagatataatgtgcttgttgcaaccgatgttgctggacgtggtattgacattcctg |
56168618 |
T |
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| Q |
101 |
atgtggctcatgttatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtactggtcgtgcaggaaagacaggtgtggctac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56168619 |
atgtggctcatgttatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtactggtcgtgcaggaaagacaggtgtggctac |
56168718 |
T |
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| Q |
201 |
aacattcctgactcttcaggacactgat |
228 |
Q |
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| T |
56168719 |
aacattcctgactcttcaggacactgat |
56168746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 707191 - 706964
Alignment:
| Q |
1 |
tcacaggatcagagggagattagtcttgaaggatttaggaccaagagatataatgtgcttgttgcaaccgatgttgctggacgtggtattgacattcctg |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
707191 |
tcacaggatcagagggaaattagtcttgaaggatttaggaccaagagatataatgtgcttgttgcaaccgatgttgctggacgtggtattgacattcctg |
707092 |
T |
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| Q |
101 |
atgtggctcatgttatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtactggtcgtgcaggaaagacaggtgtggctac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |
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| T |
707091 |
atgtggctcatgttatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtaccggccgtgcaggaaagacgggtgtggctac |
706992 |
T |
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| Q |
201 |
aacattcctgactcttcaggacactgat |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
706991 |
aacattcctgactcttcaggacactgat |
706964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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